1. Home
  2. Full-length cDNAs
  3. RAFL16-54-P05

RAFL16-54-P05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19877)

full reading [+] show sequence

Nucleotide sequence: RAFL16-54-P05 - full reading 
ATGTTTTAGC TTTAACTGCT TTTTTTTTGT TGTTGGTGTA ATGATATCAC 
AGAGAGAAGA AAGAGAAGAG AAGAAGCAGA GAGTGATGGG AGATAAGAAA 
TTGATTTCAT CTTCTTCTTC TTCCTCGGTT TACGATACTC GTATCAATCA 
TCATCTTCAT CATCCTCCGT CTTCTTCCGA CGAAATCTCT CAGTTTCTCC 
GGCATATTTT CGACCGTTCT TCTCCTTTAC CTTCTTACTA CTCCCCGGCG 
ACGACTACAA CGACGGCGTC TTTGATTGGT GTGCACGGGA GCGGTGACCC 
ACATGCAGAT AACTCGAGAA GTCTCGTTTC TCATCATCCA CCGTCAGATT 
CTGTGCTTAT GTCGAAACGT GTCGGAGATT TCTCTGAGGT TTTAATCGGC 
GGAGGATCAG GCTCAGCCGC CGCGTGTTTT GGTTTCTCCG GTGGTGGTAA 
TAATAACAAC GTTCAAGGAA ATAGCTCTGG GACTCGAGTA TCGTCTTCTT 
CCGTTGGAGC TAGTGGCAAC GAGACAGATG AGTATGACTG TGAAAGCGAG 
GAAGGAGGAG AAGCTGTAGT TGATGAAGCT CCCTCTTCCA AGTCAGGTCC 
TTCTTCTCGT AGTTCATCTA AAAGATGCAG AGCTGCTGAA GTTCATAATC 
TCTCTGAGAA GAGGAGGAGA AGTAGAATTA ATGAAAAAAT GAAAGCTTTA 
CAAAGTCTCA TCCCTAATTC AAATAAGACG GATAAGGCTT CAATGCTTGA 
TGAAGCCATT GAGTATCTGA AACAGCTTCA GCTCCAAGTT CAGATGTTGA 
CTATGAGAAA TGGAATAAAC TTGCATCCTT TGTGTTTACC TGGAACTACA 
TTACACCCAT TGCAACTCTC TCAGATTCGA CCCCCTGAAG CAACCAATGA 
TCCTCTGCTT AATCATACCA ATCAGTTTGC TTCGACTTCT AATGCACCGG 
AAATGATCAA TACTGTGGCT TCTTCATACG CTTTGGAACC TTCTATTCGC 
AGTCACTTTG GACCTTTCCC TCTCCTTACT TCACCCGTGG AGATGAGTCG 
GGAAGGTGGG TTAACTCATC CAAGGTTGAA CATTGGTCAT TCCAACGCAA 
ACATAACCGG GGAACAAGCT CTGTTTGATG GACAACCTGA CCTAAAAGAT 
CGAATTACTT GAACAGTGTC CCAACTTCGG GATCTCTATG TGTTCTTGTT 
TCTTAGAACG CAAGCCATAA AGCTGTCTGA CAATGGAGAT GCATTTAACT 
GTCTTTATTT TTTCTAAGGT TCTATTTAAA ATCAATTGTT GGTGACACGA 
ATTCTAGAGT CTAATCTTTT GGATCTAATA GCTATATATA AAAAGGACTG 
AAATTTTATT ACAAAGTAAT TGACTAATTG TTAGATTGTT GTATGTTTAT 
GGTGGATGTA AATTTTCTAG ATCATCTTCG TATTGTATTT GAGAGTTTGA 
TACTCGATGG CTTTGGATAT GTAAATTACC CCGATAAGCT TCTAGAGAAG 
TTTTCGATTC TAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G36930.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Helix-loop-helix DNA-binding domain 6.3e-14
ProfileScan Helix-loop-helix DNA-binding domain 15.833
HMMSmart Helix-loop-helix DNA-binding domain 4e-18
superfamily Helix-loop-helix DNA-binding 1.8e-18
Coil coiled-coil 0
HMMPanther TRANSCRIPTION FACTOR EC 2.9e-08
HMMPanther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCR 2.9e-08
Gene3D Helix-loop-helix DNA-binding 2.7e-08

See the detailed result >

AT4G36930.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
Computational Description
SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-54-P05 introduced

  • F04545 - Specific phenotypes were NOT observed.
  • F10810 - seed::increased size
  • F11318 - Specific phenotypes were NOT observed.
  • F22318 - Specific phenotypes were NOT observed.
  • F25346 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found