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  3. RAFL16-66-K19

RAFL16-66-K19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10159)

full reading [+] show sequence

Nucleotide sequence: RAFL16-66-K19 - full reading 
CTTAGCCAAC AAAAAATGGC AGAACTTATT CCTTGGTACT ACACTTCAGG 
GTCAGGGATC GTACTTGTAC TTCAAACCAT TTTTCTCTTC TCGATCGTAC 
GTGCTGATTT ACCAGGCTCA TGGGAACTCA TTGTACAAGA CGCCGGTATA 
GCTTCTATGC ACACGGCGGT GACCCGGTTC AACACGGTCA TCCTTCTAGA 
CCGAACTAAC ATCGGACCGT CGAGAAAGGC TCTTGACCGT CACCGGTGCC 
GGAGAGACCC AAAAGACGCC GCTTTGAAAC GCGATTGTTA CGCTCACTCG 
GTTCTGTTCG ACCTTGGTAC AAATCAGATC AGACCACTGA TGATACAAAC 
CGACACGTGG TGCTCGTCGG GCCAGTTTTT ATCCGACGGA TCGTTGCTAC 
AAACGGGTGG GGATAAAGAC GGGTTTAAAA AGATACGTAA ATTCGAACCC 
TGTGACCCGA ACGAAACGTG CGATTGGGTG GAGCTTCAAG ATACCGAATT 
GATAACCGGA CGCTGGTACG CTTCTAACCA GATATTACCG GATGGTTCGG 
TTATCATCGT CGGTGGTAGA GGAACTAATA CGGTTGAGTA TTACCCTCCA 
CGCGAAAACG GTGCCGTTCC GTTTCAGTTT CTTGCTGACG TGGAAGACAA 
ACAAATGGAT AATCTCTATC CGTACGTTCA TCTCCTCCCC GACGACGACG 
GTGGCAATCT CTTCATCTTC GCCAACAGTC GCGCCGTTAA ATACGATCAC 
CGGATAAACG CCGTCGTGAA AGAGTATCCA CCGTTAGACG GTGGTCCGAG 
GAATTATCCG TCAGGTGGAT CATCGGCGAT GCTAGCTATC CAAGGAGATT 
TCACCACAGC GGAGATTCTA ATCTGCGGCG GAGCACAATC CGGAGCCTTC 
ACAGCGCGTG CAATTGATGC TCCGGCGCAT GGAACCTGCG GACGAATCGT 
AGCTACCGCG GCGGATCCTG TTTGGGTGAC GGAGGAGATG CCGTTCGGGA 
GAATCATGGG AGATATGGTG AATTTACCGA CGGGAGAGAT TCTGATCATA 
AACGGAGCTC AAGCCGGAAG CCAAGGATTC GAAATGGGAT CCGATCCGTG 
TTTATACCCG CTTTTATACC GACCCGATCA ACCAATTGGT TTACGATTCA 
TGACGTTGAA CCCAGGAACT GTACCGAGAA TGTACCATTC CACGGCGAAT 
CTTTTACCGG ACGGTAGAAT TCTTCTCGCC GGAAGCAATC CTCACTATTT 
CTACAAATTC AACGCCGAAT TCCCAACGGA GCTACGGATC GAAGCGTTTT 
CACCGGAGTA TCTGTCACCG GATCGAGCTA ATCTCCGACC AGAGATCCAA 
GAAATCCCGC AGATCATACG GTACGGAGAG GTTTTCGACG TGTTCGTGAC 
CGTGCCGTTG CCGGTGGTGG GGATAATTCA GATGAATTGG GGAAGTGCGC 
CTTTTGCGAC TCATTCGTTT TCTCAAGGTC AACGGCTCGT TAAGTTGACC 
GTTGCTCCGT CTGTGCCTGA CGGAGTAGGT CGTTATAGGA TTCAGTGTAC 
GGCTCCACCT AACGGCGCCG TTTCTCCGCC TGGGTATTAT ATGGCCTTCG 
CTGTTAACCA GGGAGTTCCT AGCATTGCTC GATGGATACG AATAGTTTCT 
TGATTTAAAA CCAGAGGAGA TATTTAAAAT GTTAATTTGT TAAATAGTTA 
AACACATCAT GTAATATAAA TATTTTCATG GAAAAACTTA CTCCGCAAAG 
T

Gene models with high sequence identity

  1. AT3G53950.1 [+] show detail - glyoxal oxidase-related protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Galactose oxidase, beta-propeller 1.4e-91
Gene3D Immunoglobulin-like fold 4.2e-19
HMMPfam Glyoxal oxidase, N-terminal 5.5e-109
HMMPfam Domain of unknown function DUF1929 2.3e-24
superfamily Galactose oxidase/kelch, beta-propeller 3.7e-41
superfamily Immunoglobulin E-set 3.6e-27

See the detailed result >

AT3G53950.1

Model type
Protein coding
Short Description
glyoxal oxidase-related protein
Computational Description
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 849 Blast hits to 839 proteins in 169 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 246; Plants - 262; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-66-K19 introduced

  • F11532 - Specific phenotypes were NOT observed.
  • F13109 - seed::increased size / seed::increased length / seed::decreased width
  • F17425 - Specific phenotypes were NOT observed.
  • F23148 - Specific phenotypes were NOT observed.
  • F25542 - Specific phenotypes were NOT observed.
  • F27130 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found