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  3. RAFL16-73-B12

RAFL16-73-B12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10218)

full reading [+] show sequence

Nucleotide sequence: RAFL16-73-B12 - full reading 
AATCTTCTCT CCACACAAAA TTCAAAAACC TCACATTTCA CTTCTCTCTT 
CTCGCTTCTT CTAGATCTCA CCGGTTTATC TAGCTCCGGT TTGATTCATC 
TCCGGTTATG GGGAGAGAAT GAGGAGTTAC CGTTTTAGTG ATTATCTACA 
CATGTCTGTT TCATTCTCTA ACGATATGGA TTTGTTTTGT GGAGAAGACT 
CCGGTGTGTT TTCCGGTGAG TCAACGGTTG ATTTCTCGTC TTCCGAGGTT 
GATTCATGGC CTGGTGATTC TATCGCTTGT TTTATCGAAG ACGAGCGTCA 
CTTCGTTCCT GGACATGATT ATCTCTCTAG ATTTCAAACT CGATCTCTCG 
ATGCTTCCGC TAGAGAAGAT TCCGTCGCAT GGATTCTCAA GGTACAAGCG 
TATTATAACT TTCAGCCTTT AACGGCGTAC CTCGCCGTTA ACTATATGGA 
TCGGTTTCTT TACGCTCGTC GATTACCGGA AACGAGTGGT TGGCCAATGC 
AACTTTTAGC AGTGGCATGC TTGTCTTTAG CTGCAAAGAT GGAGGAAATT 
CTCGTTCCTT CTCTTTTTGA TTTTCAGGTT GCAGGAGTGA AGTATTTATT 
TGAAGCAAAA ACTATAAAAA GAATGGAACT TCTTGTTCTA AGTGTGTTAG 
ATTGGAGACT AAGATCGGTT ACACCGTTTG ATTTCATTAG CTTCTTTGCT 
TACAAGATCG ATCCTTCGGG TACCTTTCTC GGGTTCTTTA TCTCCCATGC 
TACAGAGATT ATACTCTCCA ACATAAAAGA AGCGAGCTTT CTTGAGTACT 
GGCCATCGAG TATAGCTGCA GCCGCGATTC TCTGTGTAGC GAACGAGTTA 
CCTTCTCTAT CCTCTGTTGT CAATCCCCAC GAGAGCCCTG AGACTTGGTG 
TGACGGATTG AGCAAAGAGA AGATAGTGAG ATGCTATAGA CTGATGAAAG 
CGATGGCCAT CGAGAATAAC CGGTTAAATA CACCAAAAGT GATAGCAAAG 
CTTCGAGTGA GTGTAAGGGC ATCATCGACG TTAACAAGGC CAAGTGATGA 
ATCCTCTTTC TCATCCTCTT CTCCTTGTAA AAGGAGAAAA TTAAGTGGCT 
ATTCATGGGT AGGTGATGAA ACATCTACCT CTAATTAAAA TTTGGGGAGT 
GAAAGTAGAG GACCAAGGAA ACAAAACCTA GAAGAAAAAA AACCCTCTTC 
TGTTTAAGTA GAGTATATTT TTTAACAAGT ACATAGTAAT AAGGGAGTGA 
TGAAGAAAAG TAAAAGTGTT TATTGGCTGA GTTAAAGTAA TTAAGAGTTT 
TCCAACCAAG GGGAAGGAAT AAGAGTTTTG GTTACAATTT CTTTTATGGA 
AAGGGTAAAA ATTGGGTTTT GGGGTTGGTT GGTTGGTTGG GAGAGACGAA 
GCTCATCATT AATGGCTTTG CAGATTCCCA AGAAAGCAAA ATGAGTAAGT 
GAGTGTAACA CACACGTGTT AGAGAAAAGA TATGATCATG TGAGTGTGTG 
TGTGTGAGAG AGAGAGAGAA GAGTATTTGC ATTAGAGTCC TCATCACACA 
GGTACTGATG GATAAGACAG GGGAGCGTTT GCAAAAGATT TGTGAGTGGA 
GATTTTTCTG AGCTCTTTGT CTTAATGGAT CGCAGCAGTT CATGGGACCC 
TTCCTCAGCT TCATCATCAA ACAAAAAAAA AATCAAGTTG CGAAGTATAT 
ATAATTTGTT TTTTTGTTTG GATTTTTAAG ATTTTTGATT CCTTGTGTGT 
GACTTCACGT GACGGAGGCG TGTGTCTCAC GTGTTTGTTT TCTCTTCAAA 
TCTTTTATTT TGGCGGGAAA TTTTGTGTTT TTGATTTCTA CGTATTCGTG 
GACTCCAAAT GAGTTTTGTC ACGGTGCGTT TTAGTAGCGT TTGCATGCGT 
GTAAGGTGTC ACGTATGTGT ATATATATGA TTTTTTTTTG GTTTCTTGAA 
AGGTTGAATT TTATAAATAA AACGTTTCTA TTATATGAAA AAAAAAAAAA 
AAAAAAAAAG

Gene models with high sequence identity

  1. AT1G70210.1 [+] show detail - CYCLIN D1;1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Cyclin, N-terminal 4.5e-32
HMMPfam Cyclin, C-terminal 2.9e-12
Gene3D Cyclin-related 4.6e-27
HMMPanther Cyclin D 3.1e-96
HMMPanther CYCLINS 3.1e-96
superfamily Cyclin-like 1.6e-37
superfamily Multiheme cytochromes 5.3e-09
PatternScan Cyclin, N-terminal 0
HMMSmart Cyclin 3.5e-20

See the detailed result >

AT1G70210.1

Model type
Protein coding
Short Description
CYCLIN D1;1
Curator Summary
Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.
Computational Description
CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-73-B12 introduced

  • F26951 - Specific phenotypes were NOT observed.
  • F27839 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found