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  3. RAFL16-78-O20

RAFL16-78-O20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10266)

full reading [+] show sequence

Nucleotide sequence: RAFL16-78-O20 - full reading 
AATTTCCTTA CTCTTCTTCA CTTCCGCCAT AGCTGAAACC TTCAAAAACC 
TCGATTCTCA TCCACAGTTC CCTTGTAAAC CTCCTCATTT TAGCTCTTAT 
CCCTTCTGCA ATGTCTCTTT ATCCATAAAA CAACGAGCAA TTTCTCTCGT 
CTCCCTCCTC ATGCTCCCAG AGAAGATAGG TCAGCTCTCA AACACAGCTG 
CTTCAGTACC CCGTCTCGGT ATTCCTCCGT ACGAGTGGTG GTCGGAGTCT 
TTACACGGAC TCGCCGATAA CGGTCCCGGA GTTTCCTTCA ACGGTTCGAT 
CTCCGCCGCT ACTAGTTTTC CTCAGGTAAT CGTATCTGCT GCATCTTTCA 
ATAGAACGCT ATGGTACGAG ATTGGATCTG CTGTTGCGGT GGAAGGTCGG 
GCTATGTACA ACGGTGGTCA AGCTGGGTTG ACGTTTTGGG CTCCGAATAT 
AAATGTGTTT AGGGATCCGA GATGGGGAAG AGGACAGGAG ACTCCTGGTG 
AGGATCCGAA GGTAGTTTCC GAGTATGGAG TTGAGTTCGT TAGAGGGTTT 
CAAGAGAAGA AGAAAAGGAA GGTTTTGAAA AGAAGATTTA GTGATGATGT 
TGATGATGAT CGTCATGATG ATGATGCTGA TGGGAAGCTC ATGTTATCTG 
CTTGTTGTAA GCATTTCACT GCCTATGATT TGGAAAAATG GGGGAATTTC 
ACTAGATACG ACTTCAATGC TGTGGTCACA GAACAGGACA TGGAAGACAC 
ATATCAGCCC CCATTTGAGA CTTGTATAAG AGATGGTAAA GCTAGCTGCT 
TGATGTGTTC ATATAATGCA GTTAATGGGG TCCCTGCTTG TGCGCAAGGA 
GACTTATTAC AAAAAGCTCG AGTTGAGTGG GGATTTGAAG GGTACATTAC 
ATCAGACTGT GATGCTGTGG CAACTATTTT TGCGTACCAA GGATATACCA 
AGTCACCTGA GGAAGCTGTT GCTGATGCCA TAAAAGCAGG GGTGGATATA 
AATTGTGGAA CATACATGCT TCGGCACACA CAATCTGCGA TTGAGCAGGG 
GAAGGTGAGC GAAGAACTAG TAGACCGAGC TCTGCTAAAT CTCTTTGCTG 
TTCAACTTCG TCTTGGACTT TTTGATGGTG ATCCAAGAAG AGGACAGTAC 
GGAAAGTTAG GATCAAATGA CATTTGTAGC TCAGACCACA GAAAATTGGC 
ACTGGAAGCA ACAAGACAGG GTATCGTGCT CCTGAAAAAT GATCACAAGT 
TGTTGCCTTT GAACAAAAAC CATGTTTCTT CATTAGCAAT CGTTGGTCCA 
ATGGCGAATA ATATAAGCAA TATGGGCGGT ACTTATACAG GAAAGCCGTG 
TCAACGAAAG ACTTTGTTCA CGGAACTTCT GGAGTATGTG AAGAAGACAT 
CTTATGCGTC TGGTTGCTCA GACGTGTCTT GTGATTCTGA TACCGGATTT 
GGAGAAGCTG TGGCCATCGC CAAGGGAGCG GATTTTGTCA TAGTAGTTGC 
AGGATTAGAT CTCTCTCAAG AAACCGAGGA TAAGGATCGA GTTAGTCTTT 
CTTTGCCTGG TAAACAGAAA GATCTTGTGT CTCATGTTGC TGCTGTGAGC 
AAAAAACCGG TGATTCTTGT TCTAACCGGT GGAGGACCAG TGGATGTAAC 
GTTTGCTAAA AATGACCCGA GAATCGGAAG CATTATCTGG ATTGGTTATC 
CAGGTGAAAC TGGTGGACAA GCACTCGCTG AAATCATATT TGGAGACTTC 
AATCCAGGTG GTAGATTACC GACAACGTGG TATCCGGAGT CATTCACGGA 
TGTGGCAATG TCGGATATGC ACATGAGAGC CAATTCATCT CGTGGATATC 
CAGGAAGAAC GTACAGATTC TATACCGGAC CTCAAGTTTA CAGTTTTGGG 
ACCGGTTTAA GCTACACGAA ATTCGAGTAC AAGATCTTAT CAGCACCAAT 
CAGACTTAGC TTATCGGAAC TTCTTCCACA ACAGTCTTCT CACAAGAAAC 
AACTACAACA TGGAGAAGAA CTTCGATACT TACAGCTCGA TGATGTGATT 
GTTAACTCTT GCGAATCTCT GCGGTTTAAC GTTCGTGTTC ATGTGAGCAA 
TACCGGAGAA ATCGACGGTA GTCATGTTGT GATGCTGTTT TCGAAAATGC 
CACCGGTTTT ATCTGGTGTT CCGGAGAAGC AGCTGATTGG TTATGATCGT 
GTTCATGTTC GTTCCAATGA AATGATGGAA ACAGTGTTCG TAATCGATCC 
TTGCAAGCAG CTAAGCGTAG CGAATGATGT CGGGAAGAGA GTGATTCCTC 
TGGGGAGTCA TGTCTTGTTC TTGGGAGATT TACAACATTC TCTCTCTGTT 
GAATTCTAAA ACACTGTAAT CCGAAAAAAT TTCATTACTG TTTATTTCCT 
TCTAGAATGA TCTATATATA TACTTTTGAA ACT

Gene models with high sequence identity

  1. AT5G10560.1 [+] show detail - Glycosyl hydrolase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Glycoside hydrolase, catalytic core 9.3e-94
superfamily Glycoside hydrolase, family 3, C-terminal 3e-29
HMMPfam Glycoside hydrolase, family 3, N-terminal 2.7e-53
HMMPfam Glycoside hydrolase, family 3, C-terminal 4.4e-51
Gene3D Glycoside hydrolase, family 3, N-terminal 2.1e-80
Gene3D no description 2.6e-48

See the detailed result >

AT5G10560.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family protein
Computational Description
Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT1G78060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-78-O20 introduced

  • F04013 - Specific phenotypes were NOT observed.
  • F16043 - Specific phenotypes were NOT observed.
  • F20312 - rosette leaf::increased length / stem::increased thickness / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

4 mutant lines found