1. Home
  2. Full-length cDNAs
  3. RAFL16-95-M21

RAFL16-95-M21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10407)

full reading [+] show sequence

Nucleotide sequence: RAFL16-95-M21 - full reading 
ATCTGCAGGA GTGAATCGCA AAACCAAATT TGGAGGATTC TTTCTGAGGG 
GTTTCTCAGT GAGAAAATGG CTTCGAAACG GATCTTGAAG GAGCTGAAGG 
ATCTCCAGAA AGACCCTCCA ACCTCCTGCA GTGCAGGTCC AGTTGCTGAA 
GACATGTTTC ATTGGCAAGC TACAATTATG GGTCCTGCAG AGAGTCCGTA 
TTCAGGCGGT GTGTTTCTCG TTACCATTCA CTTCCCTCCG GACTATCCAT 
TCAAACCACC AAAGGTTGCA TTTAGGACGA AGGTGTTTCA CCCTAATATC 
AACAGCAACG GAAGCATTTG CCTTGACATT TTGAAAGAAC AATGGAGCCC 
TGCCCTCACC ATTTCCAAGG TGTTGCTCTC GATATGTTCG CTGTTAACAG 
ATCCAAATCC AGATGACCCT TTGGTACCAG AGATTGCACA CATGTACAAA 
ACCGACAGAG CCAAATACGA GGCTACTGCA AGAAACTGGA CTCAGAAGTA 
TGCCATGGGC TAAACAAAGA TTCGTATGCT TCAGCACCTG TTTATGTTTT 
CATGTCTGTT TCTTTCTTCT TCTTGTTTTA ACTTTAATAA AAATGTCTAA 
AATATCAACT TTTTCGTCTG TACTATATAT GTTTATGGGT TTTATTATCA 
TCATCTTTAT CTGAAATTTG AAGATGGAAT TCTAAAGCTT GAAGGTTATT 
TGTTAAAGTT TATTTACTAG TGAGTGATGA GAAACATTGT GTTGTTGTTC 
ATTTCATTTT TTCTTTGTCA GGAATATTCA TTGACTTGTT TTCTTTAAAA 
AAAAAAAAAA AAAAAAATGA GGTTCTCGAG AACCGCTCAC ACAAAAACGT 
TTTCGAAATC CCTAATCTAC TCTCTCTTCT CTATATCTCT ACTCTTGAGA 
AATGGCTCTT AGAACTGTGC TCGTCTCCGA CGTCCCTAGC CTCCCGGATT 
CTGTCTACGG TTTATCCGAA GGTTTAGAGT TGAGCAAACC GACGTCGTTT 
AGGTTACCGG GGTTTTCGGT GATTGGACAT AGAGGAATCG GTATGAATGT 
GTTGCAATCG TCTGATCGGA GAGCGAGAGG TGTTAAAGAA AACTCGATTC 
TTTCATTCAA TTCCGCCGCT AAGTATCCGA TTGATTTCAT TGAGTTCGAT 
GTTCAGGTGA CAAAAGATGA TTGCCCTGTC ATTTTCCATG ATGATTTCAT 
CTACTCTGAA GAAAATGGTA TTGTTAATGA GAGTAGAGTG ACGGATCTGA 
GTCTGTCTGA GTTTCTCCTT TATGGACCTC AGAAGGAAAC TGAGAAAATA 
GGGAAGACAC TGATGAGGAA ATCTAAAGAA GGGAAGGTTT TGAAATGGGA 
CGTTGATTTG GATGATTCTC TTTGTACGTT GCAAGAAGCT TTTGAACAAG 
TTGAACAAAC TCTTGGGTTC AATATCGAGT TGAAATTTGA TGATCAGACC 
GTCTATGAAC GAGAGTTTCT TGTCCATATC CTGAGATCAG TACTACAGGT 
GGTCTCTAAT TATGCTAAAG ACAGACCAGT AATCTTCTCA AGTTTCCAAC 
CAGATGCAGC TAAGCTTGTT AGGGAACTGC AGAGCACTTA CCCTGTTTTC 
TTTCTGACTG ATGCGGGAAA CGAGATTCAC AATGACGAGA GAAGAAACTC 
GCTCGAAGAA GCCATTCAAG TTTGCTTGGA AGGAGGTCTT CAAGGTATTG 
TTTCAGAGGT AAAAGGAGTG TTCAGGAACC CAGCAGCCAT TAGCAAGATC 
AAAGAATCTA ACCTCTCTCT CCTCACATAC GGCAAACTCA ACAATGTCGG 
AGAGGCAGTG TACATGCAAT ATGTGATGGG GATCGATGGA GTGATTGTAG 
ATTTTGTTGA GGAGATTATA GAGTCCACGA CACGCATGAT GATAAGACCA 
CCACCATCAT CATCACCATT ACCATCACCT TCCAAGGATG ATGATGTTGC 
CATTACAAGA CCTGAGTTTT CACAGAAGGA GATTTCTTTT CTTCTCAAGC 
TTCTCTCTCA GTTGATACAA CATTGATATC TCTGTTTTTT CGTTTTCTTT 
TATCCCAAGT TTCTTTTTAG GGTTTGATTT TCTTATTGAT TTAATTATTA 
TTCTGGGTGT ATTACCCAAT AGTTGGAATT GTAAATAATT ATAAATTTAT 
TTCTTTT

Gene models with high sequence identity

  1. AT5G41080.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ubiquitin-conjugating enzyme, E2 4.7e-80
HMMPanther RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K 5.7e-84
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6e-109
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6e-109
Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.6e-61
Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.1e-35
PatternScan Ubiquitin-conjugating enzyme, E2 0
Coil coiled-coil 0
superfamily Ubiquitin-conjugating enzyme/RWD-like 5.1e-68
superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 2.2e-39
ProfileScan Ubiquitin-conjugating enzyme, E2 48.492
HMMPfam Ubiquitin-conjugating enzyme, E2 2.1e-52
HMMPfam Glycerophosphoryl diester phosphodiesterase 1.7e-53

See the detailed result >

AT5G41080.1

Model type
Protein coding
Short Description
PLC-like phosphodiesterases superfamily protein
Computational Description
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-95-M21 introduced

  • F01520 - Specific phenotypes were NOT observed.
  • F09022 - Specific phenotypes were NOT observed.
  • F10744 - Specific phenotypes were NOT observed.
  • F11725 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / cauline leaf::increased size / stem::increased thickness / cauline leaf::abnormal / stem::abnormal / stem internode::decreased length / stem::abnormal / root::present in greater numbers in organism
  • F12817 - Specific phenotypes were NOT observed.
  • F27233 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found