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  3. RAFL16-97-F04

RAFL16-97-F04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10418)

full reading [+] show sequence

Nucleotide sequence: RAFL16-97-F04 - full reading 
GTTTCTTCTT CCTTCCTTCT TCTTCTTCTT CTTCTCTAAT TCTGGTTTCA 
AAAATCTTCT TTTTCTTTTC TTTAGTTGGA TAATTTAGTG ATTATAATTA 
TTACAATCAG CTTTTGCGCC GCAGAGTAAA CAAAAAAAAA GCTCGTTGGC 
TTTGTTCCTT TGAATCTGTT GATTGTTTTA TCGAGTGAGA AATGGGTAAT 
TGCTTAGATT CATCAGCTAA AGTGGATAGT AGCAGCCACA GTCCTCATGC 
TAATTCTGCT TCATTGAGCT CAAGAGTTTC TAGCAAGACA AGTCGTTCCA 
CAGTTCCTTC AAGCTTAAGC ATAAATTCTT ACAGCAGTGT TGAGTCTTTA 
CCTACACCAA GAACAGAAGG AGAGATTTTG TCATCACCAA ATCTTAAAGC 
TTTCACCTTT AACGAGCTCA AGAACGCTAC GAGGAACTTT CGACCCGATA 
GTCTTTTAGG TGAAGGAGGT TTTGGCTATG TGTTTAAAGG GTGGATTGAT 
GGAACTACTT TAACTGCTTC AAAACCGGGT TCTGGAATTG TTGTTGCGGT 
TAAGAAGCTT AAAACTGAAG GTTATCAAGG TCATAAAGAG TGGTTGACTG 
AAGTGAACTA TCTTGGTCAG CTTAGTCACC CAAATCTCGT CAAACTTGTT 
GGGTATTGTG TAGAGGGAGA AAACCGGTTA CTGGTATACG AGTTCATGCC 
AAAAGGAAGC TTGGAGAATC ATCTTTTTAG ACGTGGCGCT CAGCCACTTA 
CGTGGGCTAT AAGGATGAAA GTTGCAATAG GGGCTGCCAA AGGACTTACT 
TTTCTCCATG ATGCGAAATC GCAAGTGATA TACAGAGACT TTAAAGCTGC 
TAACATTCTA CTTGATGCGG AATTCAACAG TAAACTTTCA GACTTCGGTC 
TAGCTAAAGC AGGTCCTACC GGTGACAAGA CTCATGTGTC CACACAAGTC 
ATGGGTACTC ACGGATATGC TGCCCCGGAA TATGTAGCAA CAGGTCGATT 
AACTGCTAAG AGCGATGTAT ACAGTTTCGG TGTGGTACTA CTGGAATTAC 
TCTCAGGACG AAGAGCGGTG GACAGATCAA AAGTGGGAAT GGAACAGAGT 
CTAGTGGACT GGGCAACACC GTATCTCGGC GACAAGCGGA AGCTCTTTAG 
AATAATGGAC ACGAGATTAG GCGGTCAGTA TCCTCAAAAA GGAGCATACA 
CAGCAGCTAG TCTTGCATTG CAATGCTTAA ACCCTGACGC AAAACTGAGA 
CCGAAAATGT CGGAAGTTTT GGCCAAATTA GATCAGCTTG AATCAACGAA 
ACCTGGAACT GGAGTTGGAA ACAGACAAGC ACAGATTGAT TCCCCAAGAG 
GTAGTAATGG ATCTATTGTA CAGAAATCTC CAAGGAGGTA TAGTTATGAT 
CGGCCTCTCT TACACATAAC TCCTGGTGCT TCTCCTTTGC CTACTCACAA 
TCACTCTCCT CGTGTAAGAT AGGAATCACT GTAATAGTTA TCTTTTGTCT 
TTGTCTGTTG TATGCTGTTT GTAAAATGTG TTGTGTAATG GACCAAAGTT 
TCATTCTTGG CTCAATTTAT AAAATTTGGT TTCAGC

Gene models with high sequence identity

  1. AT2G02800.1 [+] show detail - protein kinase 2B
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
ProfileScan Protein kinase, catalytic domain 37.771
Gene3D no description 5e-23
Gene3D no description 9.8e-49
superfamily Protein kinase-like domain 1.7e-78
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.1e-168
HMMPfam Serine-threonine/tyrosine-protein kinase 6.2e-47
HMMSmart Serine/threonine-protein kinase domain 3.1e-39
HMMSmart Tyrosine-protein kinase, catalytic domain 2.1e-26
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0

See the detailed result >

AT2G02800.1

Model type
Protein coding
Short Description
protein kinase 2B
Curator Summary
Encodes protein kinase APK2b.
Computational Description
protein kinase 2B (APK2B); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 2A (TAIR:AT1G14370.1); Has 113663 Blast hits to 112197 proteins in 3955 species: Archae - 101; Bacteria - 13127; Metazoa - 42007; Fungi - 9244; Plants - 32902; Viruses - 370; Other Eukaryotes - 15912 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-97-F04 introduced

  • F02708 - Specific phenotypes were NOT observed.
  • F13536 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness

Mutant lines with disrupted or induced

10 mutant lines found