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  3. RAFL17-03-K20

RAFL17-03-K20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10460)

full reading [+] show sequence

Nucleotide sequence: RAFL17-03-K20 - full reading 
ATTTCTCTGA AAACCCTTAA ATCTCCGGAT TTCGATTCCC GAGGCTCGAA 
AAAACCCTAA ATCTCTTCTC CGTTCACTCA TCCAACCGAA GATGCGTGAG 
ATTCTTCACA TCCAGGGTGG TCAATGCGGT AACCAGATCG GCGCCAAGTT 
CTGGGAAGTG GTTTGCGCCG AGCACGGCAT CGATCCAACC GGAAGGTACA 
CCGGAGACTC AGATCTGCAA CTTGAGCGCA TCAACGTTTA CTACAATGAA 
GCGAGTTGCG GTAGATTCGT TCCTCGTGCA GTGCTCATGG ATTTGGAGCC 
TGGGACTATG GATAGTCTCA GATCTGGACC GTACGGTCAG ACCTTTCGAC 
CTGATAACTT CGTCTTTGGC CAATCCGGTG CTGGTAACAA CTGGGCCAAG 
GGACACTACA CGGAAGGAGC TGAACTAATC GATTCCGTTC TCGATGTTGT 
TCGTAAGGAA GCTGAGAACT GTGACTGTCT CCAAGGGTTC CAGGTTTGTC 
ACTCGTTGGG AGGAGGAACT GGATCTGGTA TGGGAACATT GTTGATCTCT 
AAGATCCGTG AAGAGTACCC AGATCGCATG ATGCTTACCT TCTCGGTGTT 
CCCTTCACCA AAGGTTTCTG ATACTGTGGT TGAGCCTTAC AACGCTACTC 
TGTCTGTCCA TCAGCTTGTT GAGAATGCTG ATGAGTGCAT GGTTCTTGAT 
AATGAGGCCT TGTACGATAT TTGCTTCAGG ACTCTCAAAC TCACTACCCC 
CAGCTTTGGT GATTTGAACC ACTTGATTTC TGCTACTATG TCTGGTGTGA 
CTTGCTGTCT GAGGTTCCCT GGTCAACTCA ACTCTGACCT CCGAAAGCTT 
GCTGTGAATC TCATCCCATT CCCCCGTCTT CACTTCTTCA TGGTGGGTTT 
TGCTCCTCTC ACCTCAAGAG GTTCTCAGCA GTACCGTTCC CTCACAGTCC 
CTGAGCTCAC CCAGCAAATG TGGGACTCCA AGAACATGAT GTGTGCTGCA 
GACCCAAGGC ACGGACGCTA CCTCACAGCC TCTGCCATGT TCCGTGGCAA 
GATGAGCACA AAGGAAGTTG ACGAGCAGAT GCTGAATGTG CAGAACAAGA 
ACTCGTCCTA CTTTGTGGAG TGGATCCCCA ACAACGTGAA ATCGACAGTC 
TGTGACATCC CACCTACTGG TCTGAAGATG GCATCAACTT TCATTGGAAA 
CTCAACATCA ATCCAAGAGA TGTTCAGGCG AGTGAGTGAG CAGTTCACAG 
CTATGTTCAG GAGAAAGGCT TTCTTGCATT GGTACACAGG TGAGGGAATG 
GACGAGATGG AATTCACAGA AGCGGAGAGC AACATGAACG ATCTTGTGTC 
AGAGTACCAG CAATACCAAG ATGCAACTGC GGATGAAGAA GGTGACTACG 
AGGATGAGGA AGAAGGTGAA TATCAACAGG AGGAAGAGTA CTGAGAATAA 
TTTAGTTATA ACTGCTTTAA AAACAAAAAC AATTTAGTCG TTTGCTACTT 
TTCTTTTTTT TAAAAGGAAC ACCTCAACTA CCAGTTGTAG TTTTTTTCTC 
TGCTTGTATT TGACATATCT GGTTGATGTT TCTGTACTTT TGTTCTTAAT 
CTTGTTATTG CCTGTGATGT TTCTATTAAT ATTTTCCAGT TGTACTGTCA 
AAAAAAAAAA AAAAACAAGA AGAAGAAGAA ACAACAAAAA TGGCTTCTCA 
GAGTTCTTCA CTTTTTCTGG TTATCTTCTT CATCTTCATC TACGCTTCTT 
CAATTCCATC CTCTATTCTC GCCAGAGCAC ATGAACATGA CGGAGATGAA 
GAGATCAGAA GCGTTGGGCG TAGATTCCTT CTAGGTTTCA AAGAAACTCC 
AAAAGGAAGT AATATCACCT TCGCTTGTTC TCCTTCAGGT CCTTGTGTCT 
CTTGCAATTC CTCCGAAAAG AGAAAAGAGA AGTATCGTTG CAGTGAAACT 
GGTTATCGTA TTCCTTTCAA ATGTAAAGAG GTTAGAGAAG AAGTGGATGC 
ACATAAGAAA AATGGAGAAG AAGAAACACA AAATGATCAA TCGAATAACA 
ATGACGAAGA AGCGAAAACA AGGAATCTGT TGGATGATTC ATCACCGGCG 
ACGAAAGTGA AGTCTCAGTC TTACAAAACT TATAGAAGCT GTGTGCCATC 
TGCAGACGAA GAGAAGTTAT CAGTTCTTGG TTTTGAGTCG ATTATGCTAG 
GACTGTTTCT GTTAAGCGGA GCTGCTATTT ACATCAGAAA GAGACAGACG 
GTACCGATGC TTGGGGTATC ATCAAGTGGA AGATTGCAAG GCAATTCTCG 
GTTTTGAAAG AACCATTTCT CGGTATGTAA AAGCTTTCAT CTGCTCACTC 
AGAAACAGAT TTAACATTTG TCATTGTCTG TTGAAAGATG AGATATGTTT 
GAGTAT

Gene models with high sequence identity

  1. AT5G62690.1 [+] show detail - tubulin beta chain 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Tubulin, conserved site 0
HMMPanther Beta tubulin 2.5e-252
HMMPanther Tubulin 2.5e-252
superfamily Tubulin/FtsZ, N-terminal 4.1e-108
superfamily Tubulin/FtsZ, C-terminal 2e-80
HMMPfam Tubulin/FtsZ, GTPase domain 1e-70
HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 8.4e-49
Coil coiled-coil 0
Coil coiled-coil 0
Gene3D Tubulin/FtsZ, GTPase domain 1.8e-122
Gene3D Tubulin/FtsZ, 2-layer sandwich domain 4.1e-41
Gene3D no description 3.9e-23
HMMSmart no description 2.1e-68
HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.3e-41
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Beta tubulin 5.6e-122
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105
FPrintScan Tubulin 4.4e-105

See the detailed result >

AT5G62690.1

Model type
Protein coding
Short Description
tubulin beta chain 2
Curator Summary
encodes tubulin beta-2/beta-3 chain
Computational Description
tubulin beta chain 2 (TUB2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold; LOCATED IN: tubulin complex, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL17-03-K20 introduced

  • F09305 - Specific phenotypes were NOT observed.
  • F19825 - Specific phenotypes were NOT observed.
  • F24846 - seed::increased size
  • F29651 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found