1. Home
  2. Full-length cDNAs
  3. RAFL17-08-M12

RAFL17-08-M12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10504)

full reading [+] show sequence

Nucleotide sequence: RAFL17-08-M12 - full reading 
AAAAAAGGAC AAATCTTGAT ATTGCTTTGA TTGCTGTTGT GTATGTATGT 
GTTTTTATAG TGAGAGAAGA AAAAAAAGCA CAATCTTTGA ATGGACTGGA 
ATTTCAAACT TAGCTCTGGT TATTTATCTG GATTCGATCA AGAACCAGAT 
TTATCACCAA TGGATGGTTC GATCTCGTTT GGTGGGTCGT CACAGTCAAA 
AGCGGATTTT TCATTTGATC TAAAACTTGG AAGAAACATT GGAAACTCTT 
CCTCTGTTTT TGGTGATACA GAGCAAGTGA TTAGTCTTAG TAAGTGGAAA 
GATAGTGCTT TAGCTAAACC AGAAGGTTCA AGAAGCTCGA GTTCAAAGAG 
AACAAGAGGG AATGGTGTTG GAACCAACCA GATGCCGATT TGTCTTGTTG 
ATGGATGTGA TTCTGATTTT AGTAATTGTA GAGAGTATCA TAAGAGACAT 
AAAGTTTGTG ATGTTCATTC AAAAACTCCT GTGGTTACTA TTAATGGTCA 
TAAACAGAGG TTTTGTCAAC AATGCAGCAG GTTTCATGCT TTGGAGGAGT 
TTGATGAAGG GAAGAGAAGT TGTAGGAAAC GTCTTGATGG ACATAATCGA 
AGACGACGGA AGCCGCAGCC TGAACATATC GGTCGTCCTG CCAACTTCTT 
TACGGGTTTT CAAGGTAGCA AATTGCTAGA GTTTTCTGGT GGTTCACATG 
TGTTTCCAAC TACATCTGTG TTGAACCCGA GCTGGGGAAA TAGTCTTGTA 
AGCGTTGCTG TAGCCGCCAA TGGTTCGAGT TATGGGCAGA GCCAGAGCTA 
TGTTGTTGGT TCTTCTCCTG CAAAGACAGG GATAATGTTT CCAATCTCTT 
CTTCTCCAAA CAGTACCAGA AGCATAGCAA AACAATTCCC TTTCTTGCAA 
GAAGAAGAAA GCTCGAGAAC CGCATCGTTG TGTGAGAGAA TGACGAGTTG 
CATCCATGAC TCTGATTGTG CTCTCTCTCT TCTGTCATCC TCCTCGTCGT 
CAGTCCCTCA TTTGCTTCAA CCACCACTTT CTTTGTCCCA AGAAGCAGTT 
GAGACAGTTT TTTACGGGTC GGGATTGTTT GAGAATGCGA GTGCAGTCTC 
TGATGGATCG GTTATATCCG GTAACGAGGC TGTCCGTCTT CCGCAGACAT 
TCCCGTTTCA TTGGGAGTAG TAGAAGAAGA AGTAGGTAGA TAGATAGAAT 
CAGAAAGATC TATTTGTGTC TCTTCTCTTC TCCCTCATTT TTCAATGTTC 
TTTATCATCA TCATTGTTCT TGTTAACACT ACAAGAAATA TGGACATTCT 
TAACACACCG AAAACGCTAT AATAACGTTT ACATAGCGGA TTCATAAACG 
CTGTGTTTGC CGG

Gene models with high sequence identity

  1. AT5G50570.2 [+] show detail - Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Transcription factor, SBP-box 2.2e-41
HMMPfam Transcription factor, SBP-box 6.1e-39
Gene3D Transcription factor, SBP-box 2.8e-25
ProfileScan Transcription factor, SBP-box 31.915

See the detailed result >

AT5G50570.2

Model type
Protein coding
Short Description
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Computational Description
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT5G50670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL17-08-M12 introduced

  • F01433 - Specific phenotypes were NOT observed.
  • F03834 - Specific phenotypes were NOT observed.
  • F08250 - Specific phenotypes were NOT observed.
  • F12936 - Specific phenotypes were NOT observed.
  • F14103 - seed::increased size / seed::increased length
  • F14105 - Specific phenotypes were NOT observed.
  • F16414 - Specific phenotypes were NOT observed.
  • F30122 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found