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  3. RAFL17-11-E08

RAFL17-11-E08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10516)

full reading [+] show sequence

Nucleotide sequence: RAFL17-11-E08 - full reading 
ACATAAGAGG GAAAAGGAAA ATGACTTATG GGGAGGAGGA GCCGGTTAGC 
CCGATGGCGC GTGTATTCCA ATCGCCGGGC ATAGACTTAT GTGCCGTGAC 
CATCATGGGT TTCAAAACAA AGATTAATCC CGACGTTGTT CTTGATGCCT 
TGAAGCAAAA TGTCTCCAAG CATCCTCGTT TCTCCAGCAT ACTGTCTGAT 
AATGGTGCAA AATGGATCGA GACCGAAGTT AATGTAGAAG ATCATGTAAT 
TGTACCATAC ATAGACGCGG AAGAGATAGG TGAAGGTGGA CAAAGCTTCA 
TCGATGATTA TATGTCACGT CTCACGATGA TTCCTCTTGA TAGATCAAGA 
CCCTTGTGGG ACATTCACAT CCTTAACGTC AAAACCTCAG AGGCTGAAGC 
AGTCGGTTTT ATAAGATCTC ACCATTCGTT GGGAGATGGA ATGTCTTTGA 
TTTCCCTCAT GCTCGCATGT ACCCATAAAA CATCAGACCC AGACATGTTT 
TCAAATGCTA TTCCATCCAT GAAACGGAGA GCCACAATGT CGCACAGCCT 
TAAAACCAAA GGCTGGTTCT TGAGGTCGAT ATTCACCATT GGTTCTACAA 
TGAGACTGCT TTGGAATACA ACTATAGATA TGTTGTTGCT TTTGGCGACG 
GTGTTGTTTT TGAAAGATAC AAAAACGCCA CTAAAAGCTG GGGCAGATGT 
CAGGAGCAAT CCAAAGAGAT TTTATCATCG AATTATCTCT TTAGATGACA 
TTAAACTTAT CAAGAACGCT ATGAACATGA CTATCAACGA TGTTCTGTTC 
GGAATTACAC AAGCATCTCT TTCTCACTAT TTGAACCGAC AGTATGGCAC 
GAAGAAGGAG GAGGATGGAG CGTTGACATC GTATCGAAAC AATCTTCCTG 
ATGGAATACG ATTTCGTGTA GCTTGTACAG TAAATCTTAG GTCAGACATT 
GGCTTCAAGC CTTTGGCAGA TATGATGGTC AAGGATTCAA AATGCAGATG 
GGGAAACTAC TTCAGCTTTA TTTTCTTGCC GTTCACCATC GGTTTACAAA 
CCGATCCATT GGTTTATTTA AAAATGTCAA AATCCATGAT GGCTCGAAAG 
AAGCACTCTT ATCACGCGGC TCTAGTGTAT TTTATCATCA AAATCGTCCT 
AAAAGTGTTT GGCGCCAAGG CGGCAGCAGA ATTATTTGAT CGACCGGTGA 
GGAACACAAC GACATGTGTT TCAAACGTCA TTGGCCCCAT GGAAGAAATC 
AGTTTCCGTG GCCATCCTGT CTCTTACATC GCTCCAAGTT CTTACGGACA 
CTCACATGCA TTGTTGATAC ATTTAATGAG TTACGCGGAT AAAATGATAA 
TTTCGTTGGC GTATGATCCT ACCGTCATAT CAGACCCTCA CAAGATTTGT 
GATGATATGG AAGAATCACT GAAAGCAATG AAAGCTTCTC TCTGTGAAAG 
AGGTTTACTC TAAGACGCAT GAGCCATATT AACTGTAATC CTTAAGACTG 
TGTATATGTT TTTGTTTGGT AAAAAATGTT GTGTTTTAGC

Gene models with high sequence identity

  1. AT5G12420.1 [+] show detail - O-acyltransferase (WSD1-like) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam O-acyltransferase, WSD1, C-terminal 2.2e-74
HMMPfam O-acyltransferase, WSD1, N-terminal 5.7e-14
superfamily CoA-dependent acyltransferases 7.1e-09

See the detailed result >

AT5G12420.1

Model type
Protein coding
Short Description
O-acyltransferase (WSD1-like) family protein
Computational Description
O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT5G16350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL17-11-E08 introduced

  • F10224 - seed::increased size / seed::increased length
  • F23627 - Specific phenotypes were NOT observed.
  • F25316 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found