1. Home
  2. Full-length cDNAs
  3. RAFL17-19-N04

RAFL17-19-N04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10577)

full reading [+] show sequence

Nucleotide sequence: RAFL17-19-N04 - full reading 
ATCGTTTAAG CTAAAACTCA ACGAGACGAC AGACGATAAA AAGGGATTAA 
GTTTCTTCTG TGTAGATTAT TCTTCTTCTT CTTCTTCTTC CATTGTCTCT 
TGGGTTGAGA TTCCGATCTC AATGTCGATC AATATCGGAG AAATCTCAAT 
TCCAGACCTT CCTATCTTCT TCTCCATGTT CTTAACCATC TACCTAATCG 
CTTACTTCAT CGTCTTCCGC AATTGGAAAC CACAAATCCG TCCCGAAGCT 
TCAAGCTGCC TGATCTCAAT CTTCCATGGA TCTCCAGCGG TTTTCCTCGC 
CACACGCGCA GTTTTCTCCT CCTCCGAACG CTCCTTCGCC TCCGCAAACA 
CCGCCGCACA AAACACCGTC CTCGATTTCA GCGTCGCTTA CTTCCTCACC 
GATCTCTTCC ACTACATCGT CTTCAACCCT AACGACGTAC TCTTCATCGG 
CCATCACGTA GCCACTCTAT TCGTCTTCCT AACCTGCAGA TTCCTCGTCT 
TCCACGGGGC TTGCGCCATC TTAGGCCTCC TGATTCTAGC TGAAGTAACA 
AGCGCGTGTC AGAACGCGTG GACGCTCGCC GGAGCAAGGA AGAATGATCC 
GGAATCACGA TTAGCTGTGA AAGTGTACGA TCTCTTGTCT CCTCCGTTTT 
ACGCCTTCTA CAGTATCGTT AGGGGTGTGT TGGGACCTTT GTTTTTCGGG 
AAAATGGTAG CGTTTTACGC TCGAGGTGGT GCTCATGGTG TGATACCTAA 
TTGGTTGTGG ATTTCTTGGG CAATTGTTGT TGGAATTGCT ATTACTGTTA 
GTATACTTTG GATTTGGAAT CTCTGGATAG AATTGTTTAG TGAAAGGAAA 
GCTAACAAAA TCAGAGTAGA CAAGAAAATT AGATAGTTTC TTCTTTCTTC 
TCTAGATCAT TGTTTGATCT TCCTTTTCAT GTACTATATA TAATATATAT 
ACCATTATTA TTCTCACCTT TTAGAATTCC TCTAAATGAT GTATGTTTTG 
GAATAATAGA TTTGCTTTTG GGT

Gene models with high sequence identity

  1. AT5G14280.1 [+] show detail - DNA-binding storekeeper protein-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam TRAM/LAG1/CLN8 homology domain 2e-17
HMMSmart TRAM/LAG1/CLN8 homology domain 1.6e-43
ProfileScan TRAM/LAG1/CLN8 homology domain 9.581

See the detailed result >

AT5G14280.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related
Computational Description
DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G27270.1); Has 335 Blast hits to 330 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 315; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL17-19-N04 introduced

  • F06922 - rosette leaf::dark green / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed / root::present in greater numbers in organism
  • F07028 - seed::increased size / seed::increased length
  • F08745 - seed::increased size / seed::increased length
  • F21044 - Specific phenotypes were NOT observed.
  • F22102 - Specific phenotypes were NOT observed.
  • F23407 - Specific phenotypes were NOT observed.
  • F27010 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found