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  3. RAFL17-39-M11

RAFL17-39-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10747)

full reading [+] show sequence

Nucleotide sequence: RAFL17-39-M11 - full reading 
ATAAATATTA ATTTTATTTT GGGTCGCCGC TTGATTTTCT GGTGGGGAAG 
TCGTAATCGT TAAATTAGGG TCTTCCCTTC TTCTTCTTCT ACATCTCCTC 
AGCCGTTTCC TACGGAGGAT TCCGATCGAT CCCTTTTCTC TTTTTTTTTT 
TTTCTTCTGG TCACCGAATC ATTGTCATAC CCCACTTTGA GCTCACAACT 
CTTCTTCCTC AGATTGCTTG ATTAGGGTTT TCTTCTGCTT GCCGAATTGA 
TTTCCAAGGA ACAACTTTTT ATTTATTTTC ATCACCTAAT CTTTCGTTTT 
CAGATTCCGA GTATCCAAAT AATATTTTTA TATTTTCTCT TTCGCCGCCA 
TGAGTTCCTC GATCCAGATC GTTGTTGAGG AGAAGCAAGT GGATGTTTTG 
CCTCTTCAAG ATCAGGATGA AAAGAAGACT CCACAAGTGT TCAATGAGCT 
GAGTTTCGGG AACCATGGGG GCTGTTGTGC AATTTGCTTG GATACTATAC 
CTCTTCAAGA AACAGCTATG GTTAAAGGCT GTGAGCATGC TTACTGTGTG 
ACGTGCATAC TCCGTTGGGC AAGTTACAAG GAGAAACCTA CCTGCCCACA 
ATGTAAGCTT CCATTTGATT TTCTCAATGT CCACCGCGCT CTCGATGGAA 
GCGTTGAAGA TTTCATGTTC GAGGAGAGTG TATGCCTCCT CCTGAGGGCA 
TCATGGTTCC AGCCACTGGA AGCAGTGGAG CGGGTTTCAG ACAATGACAA 
TTTCAACTAT GATTTCGACA TTCCACCTGA GTATGAGGAG GAGGATGAGG 
ACGACGATGA CCTTGACGAG TTTTATATGC AAGGTTCAAG TCTTCGATTA 
GGAAACCGGA GGTGGGGTGA CAATGGATTT GTGAGGGCAG GCCGCCAAGA 
AGCAAGGCCA GTCCAACATA AGAACCGAGG TGGCCAGGCT TCTGGCTCTG 
AACCCGCCTC TTCATCCTCA TGTGAGCCAA AGGAGAAGAC TAGCAGTGCC 
ATAACAGGAA GGCGTGCAAA GAGGGCAATG AAGCGTGAAG CTGCAAACAA 
AGCTGCGGAA GCAGTAGCAG CTGCAAAGCA TGAGGCCCTT TTGGTTAGGT 
TGGGAAGGAA GTGACTGTGG TTGTATCTCT GTAATTACAT CAACCCACCC 
CAACCCCAAA TGACCAAATC CTTTGACTTC GATACTTGAG AATCTGTACA 
TCAGTAGAAT TTAATAATGG TAGAACTTGT TGAACCAAAA AAAG

Gene models with high sequence identity

  1. AT5G12310.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 0.0000016
ProfileScan Zinc finger, RING-type 12.445
HMMPfam Zinc finger, C3HC4 RING-type 0.00000045
PatternScan Zinc finger, RING-type, conserved site 0
Gene3D no description 0.0000000022
superfamily RING/U-box 0.000000000000096
HMMPanther gb def: Hypothetical protein At2g28920 0.00025
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 0.00025

See the detailed result >

AT5G12310.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL17-39-M11 introduced

  • F06603 - Specific phenotypes were NOT observed.
  • F23019 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found