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  3. RAFL17-46-K07

RAFL17-46-K07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10807)

full reading [+] show sequence

Nucleotide sequence: RAFL17-46-K07 - full reading 
ATACCCTCTT CTTCCTCATC TCTCTCTGCT TAGTTTCTGA ATGTGAAGCT 
TGAGGAGAGT TCTATATCCT TTTGAATTGC TGTAATTTGG ATCTTACATA 
GACGAGAGCA GTCCTTCTGG ATCTACGCGG TTTAGGCGGG AGGAGGTTTT 
GGTATTGGGA ATGCGTTTTT GAGCTGATCT TATACGTCTA TTCAGGTTTA 
GCTCAGTCTA GAATTGGTTG GCTTGGGAAA GGTCGATGAA GAACGGGATG 
GCTGAGTGCA GCGTATGTCG TTCAAGGTTG GTTTCTCCCA GTAGCAAAGC 
TATTTCAAGG GCTTATGACA ACTACAACTA CAAGATTAGA GTATCCTCAA 
AACAACGAGC TCTCAATGTC TTTTTGGTAG TCGGTGACTG CATGCTAGTT 
GGTCTACAGC CCGTCTTAGT GTACATGTCT AAAGTGGATG GAAAGTTCAA 
CTTTAGTCCT ATTAGCGTCA ACTTCTTGAC AGAAATCGCG AAAGTTATTT 
TCGCGATGGT CATGCTATTA TTCCAGGCCA GGCACCAAAA AGTTGGAGAG 
AAACCTCTAC TATCTCTTTC CACGTTTGTC CAGGCAGCTC GGAACAATAT 
GCTTCTCGCT GTTCCAGCAG GGTTGTATGC CATTAATAAC TATCTTAAGT 
TCACAATGCA GCTATATTTC AATCCTGCTA CTGTGAAGAT GCTCAGCAAT 
CTAAAAGTTC TGGTGATTGC TGTACTACTG AAGATGATAA TGAAGCGTCG 
GTTTTCCATC ATACAGTGGG AAGCACTTGC TTTGTTGCTG ATAGGGATTA 
GTATAAATCA GCTGCGTTCT CTTCCTGAAG GAGCTACAAC TGTGGCTGTT 
CCAATTGCTA CGGGTGCATA CATATGTACC TTTATCTTTG TTACTGTCCC 
ATCTTTGGCA TCTGTCTACA ACGAGTATGC TCTAAAGAGT CAGTATGACA 
CAAGCATTTA TCTCCAGAAC TTATTTCTTT ATGGTTATGG TGCGATATTC 
AACTTCCTCG GAATACTAGG AACTGTTATA TATAAAGGTC CTGGCAGTTT 
TGACATCCTA CAAGGACATT CTAGGGCTAC TATGTTTCTG ATACTGAACA 
ACGCAGCACA AGGGATTCTA TCCTCCTTTT TCTTCAAATA TGCAGATACA 
ATCTTGAAGA AATATTCGTC CACAGTAGCC ACAATATTTA CTGGCATAGC 
ATCTGCAGCA CTCTTTGGAC ATATATTAAC AATGAATTTT CTTCTGGGAA 
TTTCTATAGT TTTCATTTCA ATGCATCAGT TCTTTTCACC CCTTTCAAAA 
GCAAAAGACG AACAACAAAA CGGAAACATA GAGTTAGTTG ACGCAAAGGA 
TGGCCATAGG GCTAAAGACT CATTCATCAA CATGGCAGCA GGAGCAACTG 
AAGAGGCTAG TCACCGCATT GAATCAGATG ACAGAGTGCC ACTTCTTCCC 
AGATAAAAAC TTTCTCAGCG ATTTAGCTTC AAAAGAATTC TTTTGGCCAA 
AGATTATTTT TAGAGATCAG GGAATTTCGA TCTTATACTA CCCGTACCCG 
CCGGATTCAG CGCAATAAAC TTCGTGAGAT TGGGTCCTTC TCTCAAAGAG 
TCAGTTAAGT TCGTTAAGAA ACATCTTTAA AGCCTAAAAC CTGTATTCTT 
TTTCAGATAG AACAAAACAA CTCTACACAT TACATGTAAT TTTAAAATAA 
ATATATGTCA CTTAAAAGCC T

Gene models with high sequence identity

  1. AT2G43240.1 [+] show detail - Nucleotide-sugar transporter family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR UDP/CMP-sugar transporter 1e-139
HMMPanther NUCLEOTIDE SUGAR TRANPORTER-RELATED 0
HMMPanther Nucleotide-sugar transporter 0
HMMPfam Nucleotide-sugar transporter 7.7e-38
superfamily Multidrug resistance efflux transporter EmrE 5e-05

See the detailed result >

AT2G43240.1

Model type
Protein coding
Short Description
Nucleotide-sugar transporter family protein
Computational Description
Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 6 (TAIR:AT3G59360.2); Has 971 Blast hits to 960 proteins in 174 species: Archae - 2; Bacteria - 18; Metazoa - 525; Fungi - 109; Plants - 182; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL17-46-K07 introduced

  • F24816 - Specific phenotypes were NOT observed.
  • F27439 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found