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RAFL19-03-N19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10894)

full reading [+] show sequence

Nucleotide sequence: RAFL19-03-N19 - full reading 
ATTCATCCGT CTCTGCAAAC AAAGGAAGAA GAATCAAGAT GGCTCTGGAA 
ATCTGTGTGA AAGCTGCTGT TGGTGCTCCT GATCATCTCG GCGACTGTCC 
GTTCAGCCAA CGGGCTCTTC TCACACTCGA GGAGAAGAGT CTTACCTACA 
AAATCCATCT GATTAACCTC TCTGACAAAC CCCAGTGGTT CTTGGACATT 
AGTCCTCAAG GGAAAGTACC AGTGCTTAAG ATCGACGACA AGTGGGTGAC 
TGATTCCGAC GTCATCGTTG GTATACTCGA GGAGAAGTAT CCTGATCCAC 
CACTCAAGAC TCCTGCTGAA TTTGCCTCTG TTGGATCCAA CATTTTTGGT 
ACTTTTGGGA CATTCTTGAA GAGCAAAGAC TCCAATGACG GATCTGAACA 
TGCCTTGCTT GTTGAGCTAG AAGCTTTGGA AAACCATCTT AAGAGTCACG 
ATGGCCCTTT TATCGCCGGA GAAAGAGTTT CCGCAGTGGA TCTAAGCTTA 
GCACCAAAGC TTTACCACCT TCAAGTTGCT CTTGGCCATT TCAAAAGCTG 
GTCTGTCCCT GAGAGCTTTC CCCATGTCCA TAACTACATG AAGACTCTGT 
TCTCGCTCGA CTCTTTTGAG AAAACTAAGA CCGAGGAAAA GTATGTGATC 
TCTGGATGGG CTCCCAAGGT TAACCCTTGA AACTATGCAC CGTTATGAGA 
TCGTTGGTGT GGTAATGTTG TTCAAGGTCT CTCTCTTATA TCAGTCAAAT 
AATGTACTTG GACCTTTTTA TGTAATGTAC TGTATCAATC AAATAAGAAG 
CCTATTTTGA AAT

Gene models with high sequence identity

  1. AT1G19570.1 [+] show detail - dehydroascorbate reductase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Glutathione S-transferase, N-terminal 16.453
ProfileScan Glutathione S-transferase/chloride channel, C-terminal 11.948
Gene3D Thioredoxin fold 4.7e-20
Gene3D Glutathione S-transferase, C-terminal-like 1.4e-37
HMMPfam Glutathione S-transferase, C-terminal 3.1e-08
HMMPfam Glutathione S-transferase, N-terminal 5.7e-08
superfamily Glutathione S-transferase, C-terminal-like 3.2e-26
superfamily Thioredoxin-like fold 2e-21
HMMPanther DEHYDROASCORBATE REDUCTASE 3.3e-133
HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.3e-133

See the detailed result >

AT1G19570.1

Model type
Protein coding
Short Description
dehydroascorbate reductase
Curator Summary
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description
dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 5234 Blast hits to 5161 proteins in 1116 species: Archae - 0; Bacteria - 2090; Metazoa - 1076; Fungi - 186; Plants - 896; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-03-N19 introduced

  • F30514 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found