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  3. RAFL19-41-F13

RAFL19-41-F13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11157)

full reading [+] show sequence

Nucleotide sequence: RAFL19-41-F13 - full reading 
ATCGAGAAAC ACTAAACTGC TATAATCATT ACCTCTCTTC GATTTCTCAA 
ACCCTATCTG GCTCTCTACC CATATGCTTC AGATCCGCAT TAAAAAAGAT 
CTGCTATCCG CAGTCATCTG TTCATAGGAA AAGATCTGGC TTTACTTTTA 
GAGATTATCT CAGATCCAGC CTTTTACCCA ATTGAAGACG TTGAATCAAT 
GAGACTCCCC GTCACCGTCA AAGCCACTAA GCCGTCGTTT CTCGTCATTT 
GGATCCGATA CTCCTCCGCC GCGTCGTCGC CGACAGTCTC CTTGAATCCA 
AGTGGACGAT TACAGCAAAC TCTCGCAGGA TCTGTGGAAG TGAAAGGAAA 
ATCTCTGCAC TCCGGTAAGT TCTCGACGGT GAAGCTAAAT CCGGAGATCG 
CCGGAGCTGG TAGGTTCTTC GAGTTTCGAT CCAGATTCAT CCCTGCGTCG 
ATTGAATTTG CTCAGGAATC GCCTCTTTGC ACGACGCTGT TGAAAGATGA 
GCTCAAAATC CGAACCGTTG AGCATTTGTT ATCAGCTCTT GAGGCGAAGG 
GAGTTGATAA TTGCAGGATT CAAATCGAGA GCGAAAGTTC CGATGATCGA 
GAAGTCGAGG TCCCTATTTT TGATGGATCA GCTAAAGAAT GGGTCGATGC 
GATACAAGGA GTTGGCATAA ACGCGGCTCA AAACCATGAT GGTGAAAGTG 
TAGAGAAGAT GGTCGCACAT GTGAACAAGC CTGTGTATGT TTGCAAGAAC 
GATACTTTTG TTGCTGCATT TCCGGCTCTA GAGACTCGGA TCACTTGTGG 
TATCGACTTC CCACAGGTGC CTGCTATAGG CTGCCAATGG TTTTCTTGGA 
GACCTATCCA TGAGTCTTCT TTTGCAAAGG ATATCGCATC ATCAAGAACC 
TTCTGTGTCT ATGAAGAGGT GGAGCGTATG CGTGAAGCAG GGCTCATTAA 
AGGAGGTTCT CTGGATAACG CCATAGTTTG TAGCGCTGAG CATGGATGGA 
TGAATCCTCC TCTGCGGTTT GATGATGAAG CATGTCGACA TAAGATTCTT 
GACCTAATCG GTGACCTCTC CCTTGTTTCA CGGGGCGGAA ATGGAGGACT 
CCCCGTGGCT CACATAGTCG CATATAAGGC GGGTCATGCA CTGCACACTG 
ACTTAGCACG TCACCTTACC ATGGACTGAA GAGTATGTGC TCGTTGTCAA 
CCATATCCCG CAAAAGCCTT GATCGTTTCT GTTTCTTTTT GGATTCGTTA 
TCCAAAGATG GTACCAATGT GGGATTTTTG TTTGTTCAAT GGAAGATCAT 
TACTCTTGTG AATACAGTAA AATTTGTAAC ATTAAACTAT TTTAGGTACT 
AATCATAGGG ACATTTTAAC CGATCAAACT GTTCCAAAAC CAAATTGAAT 
TGAAACTTAA GTTGTAGTTC AAAG

Gene models with high sequence identity

  1. AT1G25054.1 [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
    E-value: 0; Score: 99.72

 

InterPro Scan Digest

Program Description E-value
HMMTigr UDP-3-O-acyl N-acetylglucosamine deacetylase 5.7e-48
Gene3D UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal 2e-30
Gene3D UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal 8.1e-35
superfamily Ribosomal protein S5 domain 2-type fold 5e-46
superfamily Ribosomal protein S5 domain 2-type fold 3.6e-31
HMMPfam UDP-3-O-acyl N-acetylglucosamine deacetylase 4.6e-75

See the detailed result >

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-41-F13 introduced

  • F02248 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

59 mutant lines found