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RAFL19-54-K12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11264)

full reading [+] show sequence

Nucleotide sequence: RAFL19-54-K12 - full reading 
CTCGCTGAGC AGCTGCGAAT CTCACGACTT CAAGATGCCG TCGCACAAGT 
CGTTTATGAT TAAGAAGAAG TTGGGAAAGA AGATGAGACA GAACAGGCCT 
ATTCCTCACT GGATTCGTCT TCGTACCGAC AACACCATCA GGTACAATGC 
CAAGCGCAGG CACTGGCGTA GAACCAAGCT CGGATTCTAA GTGATAAGCC 
TTCTAAAAGA GTCTTCTTTA TCTGTTTGGT TTAGCATTTC CTCAAGTCTT 
CTTTTTGTTT TAAGTTATGA CATTTTCATA TTTCTGTAAG ACTTTTACTC 
TATTATGATT CATGTTACCT

Gene models with high sequence identity

  1. AT4G31985.1 [+] show detail - Ribosomal protein L39 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein L39e, conserved site 0
superfamily Ribosomal protein L39e 3.2e-19
BlastProDom Q541X1_ARATH_Q541X1; 0.000000000000004
Gene3D Ribosomal protein L39e 0.000000001
HMMPanther Ribosomal protein L39e 4.7e-32
HMMPfam Ribosomal protein L39e 1.1e-22

See the detailed result >

AT4G31985.1

Model type
Protein coding
Short Description
Ribosomal protein L39 family protein
Computational Description
Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-54-K12 introduced

  • F01412 - Specific phenotypes were NOT observed.
  • F02311 - Specific phenotypes were NOT observed.
  • F02535 - seed::increased size / seed::increased length / seed::decreased width
  • F10426 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found