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  3. RAFL19-55-A05

RAFL19-55-A05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11273)

full reading [+] show sequence

Nucleotide sequence: RAFL19-55-A05 - full reading 
AGAAACCCTT GGAGTCTTGG ACTGCTCTGC GAGAGAACAT ATCAACCTTC 
TACACTCTTC CAAAATCGCC ATCTTTATCT AAAGCTCCCC GAAATGTCAG 
AACAGTATTC CGAAGATGCT AAACATATCG AGAAGCTTTA TGAGTTCGAC 
GAGCGCTTGA GCGAGTCCAC GGACAAGTCT CAGAATGTTC AAGACTATGA 
AGGGATTATT GAGTTGTCTA AGACGAACAT CAAGACAAAG CAGCTTGGAG 
CTCAACTGAT TCCACGCTAC TTCAAGTTCT TCACAAGTCT CGCAACAGAA 
GCTTTTGATG CGTACTTGGA TATATTCGAC GAAGTTGAAG TCGGGGTACG 
AGTTCAAGCC ATCCGCGGGC TTCCATTGTT CTGCAAGGAT ACTCCTGATT 
TTATATCTAA GATAATTGAT GTTCTTGTAC AATGTCTAAA TACTGAGGAA 
TTTGTGGAGC GTGATGCTGT GCACAAGGCT CTTATGTCAT TATTTCGGCA 
AGATACTAAG GCATCTTTGA CTGCATTGTT TAAGCACACT GAGGCCACTC 
TTAGTACTGA TGAGCAAATC CGTGAAAAGG TCTTACACTT TATTAGAGAT 
AAGGTGTTCC CTCTTAAAGG GGAACTGTTA AAGCCTCAAC AGGAAATGGA 
AAGACATATA ACCGATTTAA TCAAAAAGAG CCTAGGGGAT GTAACTGGAG 
AAGAGTTCAA TATGTTTATG GATTTCCTGA AAAGTTTGAG TATATTTGGA 
GGGAAAGCTC CTCAAGAAAG AATGCAAGAA CTTGTAGAAA TTATTGAAGG 
ACAGGCTGAT TTGGATTCAG AGTTTAATGT TTCAGATACA GATCATATTG 
ACAGGTTTAT ATCATGCCTG CAAACGGCCC TTCCATTCTT TGCAAGAGGT 
GCTCCAGGTA GCAAGTTTCT TAACTACTTG AACAAGAATA TCATGCCTGC 
TTTTGACCAG CTGCCAGAGG AGAGGAAGCT TAATTTACTC AGAGCTCTTG 
CTGAGATGTC CCCATACACA ACAGCTCAGG TAGCACGTCA GATACTTCCA 
TCAATAGTTC AGCTCTTAAA GAAGTACATG CCTGCTAGGA AAACTGGGGA 
AGAAATGAAC TTCACATATG TCGAGTGCCT GTTATACGTG CTACATCATT 
TGGCGCACAA GGCTCCAAAT GCAACAAACA GCTTGTGCGG CTACAAGATA 
GTGACTGGGC AGCCATCAGA TAGACTCGGG GAGGACTTCT CAGAGTTCAA 
CAAGGAATTC ACTGAGAGAT TGACCAGTGT TGAGGATCTA ACGAAGGCAA 
CAATGAAAAA ACTTACTCAA GGAATGTCTG AGCACAGCAA AGCCATGTCG 
ACTGCTAAGA CAGATGAAGA GAAGTCAATC GTGAAAACGA AGAAGCAGAG 
TACAACAACT GGACTCAGGA CCTGCAATAA CATATTGGCA ATGACAAAGG 
GATTGCATGC AAAAGCGCCT TCATTTATCG GAAACACCAG TGTTACTCTT 
TCTTGGAAAG AACCCACGAA AGTGACGAAA CCGTTAGCCT CTACAACGAC 
TGGAGGAAAA CGGCCTGCAA ATGGAGCCGG TAATAACGTG GGTGCAAAAA 
AGGCTCGTGT GCAGAATCAA CAACAGGTTG TGAACAAAAG ATCTGAGGGA 
ATCTCACACG GTGGTGGTAG AGGCAGTCAC AGAGGCCGAG GCCGGGGCCA 
AGGTCAGGGA AGACACAGTG GTGGTGGTGG CGGCCGTGGC CGTGGAAGAA 
GAGGCTTCTG GTAATTTCAA AGGATTCTCC ATGACACTCT TTTTTGTCTG 
TTCTTGTATA ACAGAGTATG TTTATCCTTC TTGTTTTGGC TCTTTTAGGC 
TCCTAACATT CGACAAACAA ATTAATCTCT TTTGCGATTT CTTTGGCTTC 
TCCTTTATAT GAC

Gene models with high sequence identity

  1. AT1G29030.1 [+] show detail - Apoptosis inhibitory protein 5 (API5)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Apoptosis inhibitory 5 1.7e-204
HMMPanther APOPTOSIS INHIBITOR 5-RELATED 1.7e-204
superfamily Armadillo-type fold 8.2e-16
HMMPfam Apoptosis inhibitory 5 0

See the detailed result >

AT1G29030.1

Model type
Protein coding
Short Description
Apoptosis inhibitory protein 5 (API5)
Computational Description
Apoptosis inhibitory protein 5 (API5); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Apoptosis inhibitory protein 5 (API5) (TAIR:AT2G34040.1); Has 834 Blast hits to 647 proteins in 164 species: Archae - 2; Bacteria - 50; Metazoa - 244; Fungi - 88; Plants - 132; Viruses - 7; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-55-A05 introduced

  • F07809 - Specific phenotypes were NOT observed.
  • F11727 - seed::increased length / seed::decreased width
  • F23948 - Specific phenotypes were NOT observed.
  • F28629 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found