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RAFL19-61-E05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda20191)

full reading [+] show sequence

Nucleotide sequence: RAFL19-61-E05 - full reading 
ACTCTCACCA GTCACAACCA AAAAAAAGAA AACACAAAAA CAAAGATTAT 
AATGGCTTCC TCAACCATGG CTTTGTCCTC CCCTGCCTTC GCCGGAAAGG 
CTGTGAAGCC TGCCGCATCA GATGTCCTCG GAAGCGGCCG TGTGACCATG 
AGGAAGACTG TCGCCAAGCC AAAGGGTCCA TCAGGCAGCC CATGGTACGG 
ATCTGACCGA GTCAAGTACT TGGGTCCATT CTCCGGCGAG CCCCCGAGCT 
ACCTTACCGG TGAGTTCCCC GGTGACTACG GATGGGACAC CGCTGGTCTA 
TCCGCCGACC CAGAGACCTT CGCCAGGAAC CGTGAGCTAG AAGTTATCCA 
CAGCAGATGG GCCATGCTCG GAGCCCTAGG CTGCGTTTTC CCTGAGCTAT 
TGGCTAGGAA CGGAGTGAAG TTCGGAGAAG CGGTTTGGTT CAAGGCCGGT 
TCACAGATCT TCAGCGACGG AGGATTGGAC TACTTGGGCA ACCCGAGCTT 
GGTCCACGCT CAGAGCATCT TAGCCATTTG GGCTACTCAA GTTATCCTCA 
TGGGAGCTGT TGAAGGCTAC AGAGTCGCCG GAGATGGTCC ATTGGGAGAA 
GCAGAGGACT TGCTTTACCC AGGTGGCAGC TTCGACCCAT TGGGCCTCGC 
TACTGACCCC GAGGCTTTCG CAGAGTTGAA GGTGAAGGAG CTCAAGAACG 
GAAGGTTGGC TATGTTCTCT ATGTTTGGAT TCTTCGTTCA AGCCATCGTC 
ACCGGAAAGG GACCTTTGGA GAACCTCGCC GACCATTTGG CCGACCCAGT 
CAACAACAAC GCTTGGGCCT TCGCCACCAA CTTCGTCCCC GGAAAGTGAG 
CGGCTGCTTA TTATGTGAAT GAGAGCAGAG AAAGAGAGTT TGTTTGTGGT 
CTATTCTATG TAAATTTGTG AACTTTCCTT TGTGGTATCT TTGTATAGAA 
ATCGAACCTC TTTTTCTCTA ACTGTGTTGG CGTTTTATCT GAAGACTCAA 
TTGAATTGAA ATATCCACTC TTGTAAAATT CATATGTTCT GAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT2G34420.1 [+] show detail - photosystem II light harvesting complex gene B1B2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chloroa_b-bind 9e-50
superfamily Chlorophyll a-b binding protein 9.6e-81
HMMPanther Chlorophyll A-B binding protein 2.4e-199

See the detailed result >

AT2G34420.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene B1B2
Curator Summary
Photosystem II type I chlorophyll a/b-binding protein
Computational Description
photosystem II light harvesting complex gene B1B2 (LHB1B2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2343 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2093; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-61-E05 introduced

  • F00216 - Specific phenotypes were NOT observed.
  • F02141 - Specific phenotypes were NOT observed.
  • F04802 - Specific phenotypes were NOT observed.
  • F07328 - stem::dark green / stem::abnormal / fruit::decreased length / stem::abnormal
  • F07622 - Specific phenotypes were NOT observed.
  • F11606 - Specific phenotypes were NOT observed.
  • F21511 - Specific phenotypes were NOT observed.
  • F21948 - Specific phenotypes were NOT observed.
  • F21949 - seed::increased size / seed::increased length
  • F26502 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / cauline leaf::abnormal / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::abnormal / stem::decreased thickness / cauline leaf::abnormal / fruit::abnormal
  • F27850 - Specific phenotypes were NOT observed.
  • F29625 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found