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RAFL19-61-E05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda20191)

full reading [+] show sequence

Nucleotide sequence: RAFL19-61-E05 - full reading
ACTCTCACCA GTCACAACCA AAAAAAAGAA AACACAAAAA CAAAGATTAT 
AATGGCTTCC TCAACCATGG CTTTGTCCTC CCCTGCCTTC GCCGGAAAGG
CTGTGAAGCC TGCCGCATCA GATGTCCTCG GAAGCGGCCG TGTGACCATG
AGGAAGACTG TCGCCAAGCC AAAGGGTCCA TCAGGCAGCC CATGGTACGG
ATCTGACCGA GTCAAGTACT TGGGTCCATT CTCCGGCGAG CCCCCGAGCT
ACCTTACCGG TGAGTTCCCC GGTGACTACG GATGGGACAC CGCTGGTCTA
TCCGCCGACC CAGAGACCTT CGCCAGGAAC CGTGAGCTAG AAGTTATCCA
CAGCAGATGG GCCATGCTCG GAGCCCTAGG CTGCGTTTTC CCTGAGCTAT
TGGCTAGGAA CGGAGTGAAG TTCGGAGAAG CGGTTTGGTT CAAGGCCGGT
TCACAGATCT TCAGCGACGG AGGATTGGAC TACTTGGGCA ACCCGAGCTT
GGTCCACGCT CAGAGCATCT TAGCCATTTG GGCTACTCAA GTTATCCTCA
TGGGAGCTGT TGAAGGCTAC AGAGTCGCCG GAGATGGTCC ATTGGGAGAA
GCAGAGGACT TGCTTTACCC AGGTGGCAGC TTCGACCCAT TGGGCCTCGC
TACTGACCCC GAGGCTTTCG CAGAGTTGAA GGTGAAGGAG CTCAAGAACG
GAAGGTTGGC TATGTTCTCT ATGTTTGGAT TCTTCGTTCA AGCCATCGTC
ACCGGAAAGG GACCTTTGGA GAACCTCGCC GACCATTTGG CCGACCCAGT
CAACAACAAC GCTTGGGCCT TCGCCACCAA CTTCGTCCCC GGAAAGTGAG
CGGCTGCTTA TTATGTGAAT GAGAGCAGAG AAAGAGAGTT TGTTTGTGGT
CTATTCTATG TAAATTTGTG AACTTTCCTT TGTGGTATCT TTGTATAGAA
ATCGAACCTC TTTTTCTCTA ACTGTGTTGG CGTTTTATCT GAAGACTCAA
TTGAATTGAA ATATCCACTC TTGTAAAATT CATATGTTCT GAAAAAAAAA
A

Gene models with high sequence identity

  1. AT2G34420.1 [+] show detail - photosystem II light harvesting complex gene B1B2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chloroa_b-bind 9e-50
superfamily Chlorophyll a-b binding protein 9.6e-81
HMMPanther Chlorophyll A-B binding protein 2.4e-199

See the detailed result >

AT2G34420.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene B1B2
Curator Summary
Photosystem II type I chlorophyll a/b-binding protein
Computational Description
photosystem II light harvesting complex gene B1B2 (LHB1B2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2343 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2093; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-61-E05 introduced

  • F00216 - Specific phenotypes were NOT observed.
  • F02141 - Specific phenotypes were NOT observed.
  • F04802 - Specific phenotypes were NOT observed.
  • F07328 - stem::dark green / stem::abnormal / fruit::decreased length / stem::abnormal
  • F07622 - Specific phenotypes were NOT observed.
  • F11606 - Specific phenotypes were NOT observed.
  • F21511 - Specific phenotypes were NOT observed.
  • F21948 - Specific phenotypes were NOT observed.
  • F21949 - seed::increased size / seed::increased length
  • F26502 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / cauline leaf::abnormal / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::abnormal / stem::decreased thickness / cauline leaf::abnormal / fruit::abnormal
  • F27850 - Specific phenotypes were NOT observed.
  • F29625 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found