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  3. RAFL19-64-O15

RAFL19-64-O15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11413)

full reading [+] show sequence

Nucleotide sequence: RAFL19-64-O15 - full reading 
ACGTGTACTC TTGCACCTCC GCTAACGCGT TTTGTGCACG CGCCTCCGCC 
ATCGACGCTT CGAAGTCGAC GTAGAATGTG TACTCAAAGT GCTTCGATGT 
TCCAACGTTT TCGTCGCCTA CGACTCTAAC GGGACAATTC TGATGCGGCC 
GCGATTCGAT TTTCGTCAAA CTAATGTTTC GAAACGCAAA CGCGGAAAGC 
ACTTTGAATA AAACGCTAGT TCCTTTATGT TCTTGAGCTG CGAAAACGAT 
ACTCGTTTTA AACGGACGAT CGGTACGGGG AATGATCGGA TCACGCGCCA 
ACATAAGGAA GCGCGTGACG TTTCCTGCGT CGTCTTGGAT CCCGTCGGCG 
AGAATCTGAA GTCCGTAGAG CTCAGCTGCT CTTGCGCTCG CTACCGCCGC 
CGTGTCGTGG AGGTTGTTAG CAGCGATGTA TTCCGCCGCC GCGGCTGTGT 
CGTGAAACGC TTCAATCGCT GCTTTTGGAG TGAGTTTGTT GAGCGATCCT 
TCCGTCTGAG CCAGAGCTTG AGGATGCGAA ATCACTCGCG TGATGCAATC 
CGTACGAACT CCGGGAAGAG CTAAGAGACA GTGGTGAACC GGGATCTGAA 
CTTCTCCGAC GATGTGGAGA CGGTGACGGA GGAGAAGATC GTAATTTCTA 
TGAATCGAAC CACCGAGAGA GTTCTCAACT GGGAGAACAG CACGATCGGC 
GATCCAAAGC TCCACCGCCT GAAACGCAAC GTCGAATTGA TCACAAGGAA 
TAGCTTCGGA GTTTGGGTAA GCTTTTCCGG CGGCCGCTTC GGAGTACGCT 
CCCGGAACTC CTTGATACGC GACACGAAGA GTAGATCCAT GAGACGGCGC 
GGGAGATAGA TCTGTTATCG TTAACGGCTG AATCAATCCA GGCTTTCCGT 
TGTGCTGCGA CTTTGACGGA ACAAGGCTTA AATCAACGGA GCCGTTACTG 
TGTCCGTTAA CGACGGCGAC GGAGCTTGAA TTCTCAGCCG AAACTACTTT 
ACTGGCTAAG ATGGCGCATG AGCTTTGCCA ATCGGCTCGG CTTGAGCCAA 
CACCGTTAGG GAAGCTAAAC GACTCAGACC TGTAACTGCA ACGAACAGAC 
ACGCGCTTTC CATTTACGTG AGAGTAACGC GCTTTCTTAG CCGTTAGATT 
CGGTTGAATT ACGGATTTGA GATCGCACGA GAACGCAGGC GAAATGGTTT 
GCATGATTTG AGTCGAAAAA TGAAAAAATT GCTGTTTATT TATTTTTTCT 
GGTAAGAGGA AACAAAAGAG TAAGATATAA ACGACGAGTA GAGTACAGTT 
CAAGCTTGGA GTTCTATGGT TCAGAGAGAA CTTGCAAGCT GAGAGATGAT 
GGTGGAGAAG GAAGTGTTTA TATAGTGGAA TGTTGTAAAA GAAAGAAAGT 
CTTGACGTGT CTTGAAGGGT AGTTCCGTCA AATCCTTCAC CTACCACATT 
TCATTTGATT TTCCTGAACG ATATTTGTTG TTTATATTAT AAAGTTGTTT 
TTATTTG

Gene models with high sequence identity

  1. AT5G22630.1 [+] show detail - arogenate dehydratase 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Prephenate dehydratase 47.879
PatternScan Prephenate dehydratase, conserved site 0
PatternScan Prephenate dehydratase, conserved site 0
HMMPanther PREPHENATE DEHYDRATASE (P PROTEIN) 4.3e-118
superfamily ACT-like 7.6e-16
HMMPfam Prephenate dehydratase 7.8e-58

See the detailed result >

AT5G22630.1

Model type
Protein coding
Short Description
arogenate dehydratase 5
Curator Summary
Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].
Computational Description
arogenate dehydratase 5 (ADT5); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: arogenate dehydratase 4 (TAIR:AT3G44720.1); Has 7113 Blast hits to 7110 proteins in 2246 species: Archae - 179; Bacteria - 4003; Metazoa - 2; Fungi - 120; Plants - 265; Viruses - 0; Other Eukaryotes - 2544 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-64-O15 introduced

  • F04324 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found