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  3. RAFL19-64-P10

RAFL19-64-P10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11415)

full reading [+] show sequence

Nucleotide sequence: RAFL19-64-P10 - full reading 
CTTATCCTTC TCCTCGTGAA GACTTTTCTC TCTGTTTATT TTTTTTAGGG 
TTTTCGTAAG AACAGAGCAA AAAACATGTT TGGAAGAGGA CCTTCAAGGA 
AGAGCGATAA CACAAAGTTC TACGAGATCC TTGGTGTTCC TAAGACCGCA 
GCACCAGAAG ATCTCAAGAA AGCTTATAAG AAAGCCGCTA TCAAAAACCA 
TCCTGATAAG GGTGGTGATC CCGAAAAGTT TAAAGAGTTA GCACAGGCTT 
ATGAAGTTTT AAGTGATCCT GAGAAGCGTG AGATCTATGA TCAATATGGG 
GAAGATGCAC TCAAGGAAGG AATGGGTGGT GGAGGTGGTG GACACGATCC 
ATTTGATATC TTCTCTTCCT TCTTTGGTAG TGGTGGACAC CCATTCGGAA 
GTCATAGCCG GGGAAGGAGG CAGAGGCGTG GTGAAGATGT TGTTCATCCC 
TTGAAGGTTT CCTTAGAGGA TGTTTATCTC GGAACAACAA AGAAGCTCTC 
ACTTTCTAGG AAGGCTTTGT GCTCAAAGTG TAACGGCAAG GGTTCAAAGT 
CTGGAGCTTC AATGAAATGT GGTGGCTGTC AAGGTTCGGG AATGAAGATC 
TCGATCAGGC AGTTTGGACC TGGGATGATG CAGCAGGTGC AGCATGCTTG 
TAATGATTGC AAAGGCACAG GAGAGACCAT CAATGATCGG GACAGGTGTC 
CACAATGCAA AGGAGAGAAG GTTGTCTCTG AGAAGAAGGT GCTTGAAGTA 
AATGTGGAGA AGGGAATGCA ACACAATCAG AAGATCACAT TCAGTGGACA 
AGCCGATGAA GCGCCTGATA CTGTCACCGG AGATATAGTG TTTGTCATTC 
AGCAGAAGGA GCACCCAAAG TTCAAAAGAA AGGGTGAGGA TCTCTTTGTG 
GAGCACACCA TCTCTCTAAC CGAGGCCTTG TGTGGCTTCC AGTTTGTCTT 
GACCCATTTG GACAAAAGAC AGCTTCTCAT CAAATCCAAG CCCGGAGAGG 
TCGTCAAACC TGATTCATAC AAGGCGATAA GTGATGAGGG AATGCCAATA 
TACCAAAGGC CGTTCATGAA GGGTAAGCTA TACATTCACT TCACGGTTGA 
ATTCCCGGAA TCGCTGAGCC CGGATCAGAC AAAGGCCATT GAAGCAGTTT 
TGCCAAAGCC AACCAAGGCA GCTATAAGCG ATATGGAAAT AGACGACTGC 
GAAGAGACGA CTCTGCATGA TGTGAACATT GAGGATGAGA TGAAAAGGAA 
GGCGCAAGCT CAAAGAGAGG CTTATGATGA CGATGAGGAA GATCACCCAG 
GCGGTGCTCA GCGTGTGCAA TGTGCCCAGC AGTGATCAAC ATGCGCATCT 
TAGTGATCTC CAATATTTGC TTCTGTCTTT TCTCCTTTTC ATTGTATTAT 
TTTTGGGTCT TTTTATAGAC TTTGCCAATT CAGTGGGAAG AACCTCGTCC 
T

Gene models with high sequence identity

  1. AT5G22060.1 [+] show detail - DNAJ homologue 2
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
PatternScan Heat shock protein DnaJ, conserved site 0
Coil coiled-coil 0
Gene3D Heat shock protein DnaJ, N-terminal 2.5e-21
Gene3D no description 1.8e-24
Gene3D no description 1.8e-26
HMMSmart Heat shock protein DnaJ, N-terminal 4.2e-25
superfamily Heat shock protein DnaJ, N-terminal 2.3e-35
superfamily HSP40/DnaJ peptide-binding 6.9e-22
superfamily HSP40/DnaJ peptide-binding 1.1e-18
superfamily Heat shock protein DnaJ, cysteine-rich domain 3e-18
ProfileScan Heat shock protein DnaJ, N-terminal 22.913
ProfileScan Heat shock protein DnaJ, cysteine-rich domain 23.668
HMMPanther HSP40, SUBFAMILY A, MEMBERS 1,2,4 3.6e-197
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3.6e-197
HAMAP Chaperone DnaJ 24.354
HMMPfam Chaperone DnaJ, C-terminal 1.1e-28
HMMPfam Heat shock protein DnaJ, N-terminal 9.8e-24
HMMPfam Heat shock protein DnaJ, cysteine-rich domain 1.6e-17
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54
FPrintScan Heat shock protein DnaJ 4.8e-54

See the detailed result >

AT5G22060.1

Model type
Protein coding
Short Description
DNAJ homologue 2
Curator Summary
Co-chaperonin similar to E. coli DnaJ
Computational Description
DNAJ homologue 2 (J2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 3 (TAIR:AT3G44110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-64-P10 introduced

  • F29203 - seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found