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  3. RAFL19-70-D10

RAFL19-70-D10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11490)

full reading [+] show sequence

Nucleotide sequence: RAFL19-70-D10 - full reading 
ATCGGAATCC CTAGAACACT CGATTTCAGC AAAATCAAAT CGGATTCAGT 
GATCAAAAGT CAATTTGGTC GAGAAGAAAT TGAGCGTTGA AGATGACGGA 
GGCGATGATA GGAAATAAGC CAGGAATGGC GAGTGTGAAG GATATGCCGC 
TGCTTCAGGA TGGTCCGCCA CCGGGTGGGT TCGCACCGGT CCGATATGCC 
CGCCGGATAT CCAATACGGG TCCTAGTGCA ATGGCCATGT TCCTTGCCGT 
TTCTGGTGCC TTTGCTTGGG GAATGTACCA GGTCGGCCAG GGAAACAAAA 
TCCGCAGGTA AGAACGACTT GTAATAGCTC GTTCACATTT CAATTTTTCC 
TCTAAAATTC GAGATCGCCT TGGTAAAATT AGTGTTGTGG AGTGATTGAT 
GACCATAGTA ATGTAGTGAA GGATACATTT TGGTTAATAA TTGTTGAAAC 
TTGAGTATGT TTATCGTAGG AATTGGTTAA TATTATTAAC CTATGGAAAC 
ATAGGCTTGT TGAATCACTG TTATGTATTC TGTTATTAGT ATTCCCCGAC 
ATTTTGGTTG AAGCTTAATC AGCATGAGTT TAGCCTTAAA CGAATATAAA 
GTTCGTCAAC AATTTGTAAA CTCTTAAAGC CACAATTGCA AAGATGTGAG 
AATCTGTTAT GATGAAAGCA ATTATCTAGT TGCATGTTTT GATAGTAGTT 
ATCGGGATAC TGTTTCTATG TAGATAGATT GTTTTAGTAT TATATCTGGC 
TTGATCATTA ACTTCTTATG CATTTACAAT GGTCCTAAAC AAGTCTGATT 
TGATATCAGT AAGTATCAAG ATTAATGCTC TTATCAAGAT TGATGTGATG 
TTTAGGGCAT TGAAGGAAGA GAAATATGCT GCTCGTAGAA CAATACTTCC 
CATTCTTCAA GCAGAAGAAG ATGAAAGGTA AACCATATTC TCAAATTTAA 
GTCAATGTGC CTGCAGCAAC CTTCAGATAG CAATCTTGTT TCAATCCCCG 
TTTTGCATTC TAGGTTTGTG TCTGAGTGGA AAAAGTATCT GGAATATGAG 
GCTGATGTAA TGAAAGATGT TCCGGGATGG AAAGTTGGCG AGAATGTGTA 
CAATTCTGGT CGCTGGATGC CTCCGGCCAC TGGGGAACTC CGTCCTGATG 
TGTGGTGATT TCCTAGTTTC TCTCAAATGC ATATGATGAT GATGAATGAT 
GTTTCGCTGA GGATTGATAT GTTCTTGTTA TATCTTTTTT TCTTCGGGTA 
ATAAGAGAAT GATTCAACAG ACAGTATTCT TCTTGTATTG GTTTTCTCTT 
AAGTGTTTCA ATCGTAATAT GAGGCAAAAA CAGTTTCAT

Gene models with high sequence identity

  1. AT1G04630.1 [+] show detail - GRIM-19 protein
    E-value: 0; Score: 99.70

 

InterPro Scan Digest

Program Description E-value
HMMPfam GRIM-19 4.8e-17
HMMPfam GRIM-19 2e-16
HMMPanther GRIM-19 9.7e-10
HMMPanther GRIM-19 1.4e-35

See the detailed result >

AT1G04630.1

Model type
Protein coding
Short Description
GRIM-19 protein
Computational Description
maternal effect embryo arrest 4 (MEE4); CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: GRIM-19 protein (TAIR:AT2G33220.1); Has 332 Blast hits to 332 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-70-D10 introduced

  • F07802 - Specific phenotypes were NOT observed.
  • F07903 - Specific phenotypes were NOT observed.
  • F21340 - Specific phenotypes were NOT observed.
  • F22348 - Specific phenotypes were NOT observed.
  • F28331 - Specific phenotypes were NOT observed.
  • F30008 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found