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  3. RAFL19-76-B13

RAFL19-76-B13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11559)

full reading [+] show sequence

Nucleotide sequence: RAFL19-76-B13 - full reading 
GTCATCATCA TCATCACTCT CTCTTCTTCT TCTCTCTATT CCATGGCTTT 
AGTACGTGAA CGTCGTCAGC TAAATCTCCG TCTTCCTCTT CCTCCAATCT 
CCGACCGCCG CTTCTCCACC TCTTCCTCCT CAGCCACCAC CACCACCGTC 
GCTGGCTGTA ACGGAATCTC CGCTTGTGAT CTCGAGAAAC TCAACGTTCT 
CGGATGCGGA AACGGCGGGA TTGTTTACAA AGTCCGTCAT AAAACCACAT 
CGGAGATCTA CGCTTTGAAA ACAGTTAACG GCGACATGGA TCCGATTTTC 
ACAAGACAGT TGATGCGAGA GATGGAGATT CTCCGCCGTA CAGATTCACC 
GTACGTCGTT AAGTGTCACG GAATCTTCGA GAAACCTGTC GTCGGTGAAG 
TATCGATTCT AATGGAGTAT ATGGACGGCG GAACCCTAGA ATCACTACGC 
GGCGGTGTAA CGGAGCAAAA ACTCGCCGGA TTCGCTAAAC AGATCTTAAA 
AGGATTAAGC TATTTACACG CTCTTAAGAT CGTTCATCGT GATATCAAAC 
CGGCGAATCT TCTTCTCAAT TCGAAAAACG AAGTTAAAAT CGCTGATTTC 
GGAGTTAGTA AGATCTTAGT CCGATCATTA GATTCGTGTA ATTCGTATGT 
TGGTACTTGT GCTTATATGA GTCCGGAGAG GTTTGATTCG GAATCTTCCG 
GTGGAAGCTC TGATATCTAC GCCGGAGATA TCTGGAGTTT CGGATTGATG 
ATGCTTGAGC TTCTCGTTGG TCATTTTCCT TTGCTTCCGC CGGGACAGAG 
ACCTGATTGG GCGACGTTGA TGTGCGCGGT GTGTTTTGGA GAACCGCCGC 
GAGCGCCGGA GGGGTGTTCT GAAGAGTTTA GGAGCTTCGT TGAGTGTTGT 
CTCCGTAAAG ATTCGAGTAA GCGATGGACG GCGCCGCAGC TTCTTGCTCA 
TCCTTTTCTC CGGGAAGATC TTTGATTCGA TTCCTTTTGT AACAGAATCT 
GGAATCTTAA AAGTTGGAAT ATTAGATTTG AAATTATTTT AATTTTTGTA 
GAGTTTTCTG GAGATATTTA TGATCGTGAT TTTTGTACAT ATAATATACT 
CCAGAATGTT AGGGGAAAAT CGTTCTTGT

Gene models with high sequence identity

  1. AT1G73500.1 [+] show detail - MAP kinase kinase 9
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 5.5e-83
HMMSmart Tyrosine-protein kinase, catalytic domain 6.2e-14
HMMPfam Serine/threonine-protein kinase-like domain 1.2e-58
ProfileScan Protein kinase, catalytic domain 45.375
Gene3D no description 0.00075
Gene3D no description 4.3e-46
HMMPanther MITOGEN ACTIVATED PROTEIN KINASE KINASE 1.9e-171
HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 1.9e-171
superfamily Protein kinase-like domain 1.8e-74
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0

See the detailed result >

AT1G73500.1

Model type
Protein coding
Short Description
MAP kinase kinase 9
Curator Summary
member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3.
Computational Description
MAP kinase kinase 9 (MKK9); FUNCTIONS IN: protein kinase activator activity, MAP kinase kinase activity, kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAP kinase kinase 7 (TAIR:AT1G18350.1); Has 126854 Blast hits to 125581 proteins in 4823 species: Archae - 172; Bacteria - 14892; Metazoa - 47012; Fungi - 12114; Plants - 31822; Viruses - 500; Other Eukaryotes - 20342 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL19-76-B13 introduced

  • F12343 - rosette leaf::epinastic / stem::increased thickness / cauline leaf::epinastic

Mutant lines with disrupted or induced

1 mutant line founds