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RAFL21-01-E14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11733)

full reading [+] show sequence

Nucleotide sequence: RAFL21-01-E14 - full reading 
TTCCTTTCCC TTTTTGGCGC TCAATACAAT CATGACGTTA GAGAGTTACG 
CCGGCGATGT TCACACGGTA CCACAATCGG AGAACTCGAT GGAGGAGAGA 
GGCGGCGGTG AGCTTTTCGT GCCACCTCTT AACTTCGCTA TGGTCGATAA 
TGGAATTTTC CGTTCTGGTT TTCCTGAACC CGTCAGTTTC AGCTTTCTCC 
AGTCTTTGCG TCTCAAATCC ATCATATATT TGTGTCCTGA GGCATATCCA 
GAGGTGAATA GAGAGTTTGC AAAATCAAAT GGGATCCAAG TTTTTCAATT 
TGGAATTGAA AGATGCAAGG AACCATTTGT TAATATCCCT GACGAGGTAA 
TCCGAGAAGC CTTACAAGTA CTTCTAGATA CAGAGAATCA TCCTGTCTTG 
ATTCATTGCA AAAGTGGAAA GCATCGGACG GGATGTCTTG TAGGTTGTGT 
GAGGAAGATT CAAAGATGGT GTTTGTCTTC TATCTTCGAC GAGTACCAAA 
GATTCGCAGC TGCGAAAGCT AGAATCTCAG ACCAGAGATT CATGGAGCTC 
TTTGACATCT CCAATCTAAA GCATACACCA CTTTCCTTCT CATGCTCCAA 
GAGGTATACT AATACTATTG ATTACTGAAG AAAAAAATGT ATAACTTTGT 
GTTGAATGCA ACTTGTAGTT TTGAAGCTAG ATGAAAATGG GAGATTTTGA 
TCTTTCAATA AAAGTCCGTT TATTCCAAAT CT

Gene models with high sequence identity

  1. AT4G03960.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 9.132
FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
HMMPfam Protein-tyrosine phosphatase, SIW14-like 2.2e-60
superfamily (Phosphotyrosine protein) phosphatases II 6.4e-24
PatternScan Protein-tyrosine phosphatase, active site 0
Gene3D no description 4.1e-57

See the detailed result >

AT4G03960.1

Model type
Protein coding
Short Description
Phosphotyrosine protein phosphatases superfamily protein
Computational Description
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT1G05000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL21-01-E14 introduced

  • F03946 - Specific phenotypes were NOT observed.
  • F08403 - cauline leaf::abnormal
  • F19618 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found