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  3. RAFL21-10-I04

RAFL21-10-I04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11791)

full reading [+] show sequence

Nucleotide sequence: RAFL21-10-I04 - full reading 
TGCAGAGACG CCTCCTTCTC TCGCCTCCGT GTCTCTCCAA TGCTCTCTCG 
TGTCTGCCCA ACCCTCCGCT ATAATCGTAT CTGGTCTGCT CATGCGCGTG 
AAATGCCACG CGCCACCCTC CTTCTCCTCC AACCCAACTT CTTCCACTCT 
TCCCCCAAAA CTGCTCTTGT GAATCGTCTC GATGTTACTT CATCGGAGTT 
TTCTTCCATG TTCCGTCGGA GCTTCCACGC TTTACGCAGC ACCGTAGGAG 
ACTGGAGAAA GCTTCCGAAA CCGCCGGGTC AGGTTTTTGC GGAGAGGAGA 
GAATACAGGA AGATTAGAAG GAGAGCTCCG AAGAAGAAAC AGGAATTGGA 
GCTTAGTGTT AGTATCTGCA TCGAAGAACA GCTTCCTGAT GATCTCGAGA 
TTCAGAATAT TGCAGAAATG CTTCGTCTCA ATGTACCTAT GGCAATGACA 
TTGGCTTTCA ATGGTTTGAA AGATTCAAAG TATAAAACAA GAGAGACTGA 
TATAGAAGAT CTTGGTGGGT ATGAAACTGT TGAATTATCG GTGATGCTTT 
GTAATGATGA TTTTATTTGT AAACTCAACA AAGAGTGGAG AGGTGAAGAT 
CATGCTACTG ATGTGCTTTC CATGTCACAA CATGTCCCTG AACTGAAGCT 
TCCAGTACTT ATGATGGGAG ATCTCGTCAT TTCTGTTGAG ACAGCTGCAA 
GGCAAGCTGC AGAGAGAGGG CATACTCTTC TTGATGAAAT ACGCATTCTT 
GTGATTCATG GGTTGCTACA TCTACTGGGA TTTGATCATG AAATCAGCGA 
CGAGGCTGAG CAAGAAATGG AAGAGGAAGA GGAGTTGTTG CTAAAAAACC 
TTGGGTGGAA AGGAAAAGGA CTCATTCAGA GTGCATATGA CATTCAAAAA 
ACAACTACAG TTCAGCCGGA GAAATCAGAT GACAGGAAGG AAGGGGATGG 
CCTAAGATTG TACAAACCAA AGTTCTCCTA TATATTCTGT GATATGGATG 
GTACACTGCT TAACAGTAAA AGTCAGATTT CGGAGGCAAA TGCAAAAGCT 
TTAAAAGAAG CCCTTCTGAG GGGACTTAAA GTAGTCATAG CTACGGGGAA 
GTCCCGCCCA GGTGCGATCA GAATCTTGAA GACGGCTGAT CTAACTGGAT 
CCGATGGCAT TATCTCAGAG TCCTCTCCAG GCGTTTTCGT TCAGGGATTA 
CTTGTCTATG GTAGACAAGG GAAAGAAGTG TATCGAGGAA ACTTAGACCG 
AGATGTCTGC AGAGAGACCT GTCTTTATTC TTTGGAGCAT CGAATTCCTC 
TCATTGCATT CAGCCAGGAT CGCTGCTTGA CATTGTTTGA CCACCCTCTT 
GTCGACTCTC TTCACACAAT CTACAATGAG CCAAAGGCCG AAATTATATC 
ATCGGTTGAT CAACTGATAG CTGAAGCTGA CATTCAGAAA GTGATATTTA 
TGGACACAAC CGAGGGAGTC TCATCTGTTA TCCGTCCGTA TTGGTCAGAA 
GCTACAGGAG ACCGTGCTAA TGTTGTTCAA GCTCAATCAG ACATGCTAGA 
AATCGTCCCA CCCGGAACCT CCAAAGGGAA TGGTGTAAAA ATGCTACTCA 
ATCATTTGGG CGTTTCACCG GATGAGATAA TGGCGATTGG AGATGGAGAA 
AATGACATAG AGATGCTGCA ACTGGCCTCG TTGGGAGTTG CTCTGAGCAA 
CGGTGCAGAA AAAACAAAGG CGGTGGCTGA TGTGATTGGT GTGAGCAACG 
ACCAAGATGG TGTTGCTGAT GCCATCTACC GCTACGCATT CTGAGACTCC 
ACCACCATAT TTAAGTACAA GATACACCAA ATTAAATTTT TGAGGTTAAG 
TAGGCATTAT TCTTCTTCTT TGTCTTACAG ATAAAAGACA AACATTGGTC 
ATTCTTGTCT CATTCACCCA CCTTTTGAAG GAAAATGATT GATTGC

Gene models with high sequence identity

  1. AT2G25870.1 [+] show detail - haloacid dehalogenase-like hydrolase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HAMAP Uncharacterised protein family UPF0054 21.718
HMMTigr Uncharacterised protein family UPF0054 4.6e-39
HMMTigr Cof protein 4.9e-53
HMMTigr HAD-superfamily hydrolase, subfamily IIB 7.4e-19
HMMPfam HAD superfamily hydrolase-like, type 3 2.1e-53
HMMPfam Uncharacterised protein family UPF0054 9.2e-35
PatternScan Cof protein 0
PatternScan Cof protein 0
PatternScan Uncharacterised protein family UPF0054, conserved site 0
Gene3D no description 2.1e-35
Gene3D no description 3.1e-37
HMMPanther PHOSPHOSERINE PHOSPHATASE 6.5e-05
superfamily HAD-like 2.3e-58
superfamily Metalloproteases ("zincins"), catalytic domai 4.7e-36

See the detailed result >

AT2G25870.1

Model type
Protein coding
Short Description
haloacid dehalogenase-like hydrolase family protein
Computational Description
haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL21-10-I04 introduced

  • F02809 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found