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  3. RAFL21-13-B21

RAFL21-13-B21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda20247)

full reading [+] show sequence

Nucleotide sequence: RAFL21-13-B21 - full reading 
CCGTGTCTTT TCATTTCTCT TCTTCCGGCG TTTTCTCTCC GCCGTTTCGC 
CACCGTACGT GACAATGTCT GTTTCTCTCT CCGCCGCCTC TCACTTACTC 
TGTTCCTCCA CCAGAGTCTC TCTTTCCCCC GCCGTCACCT CTTCGTCCTC 
GTCCCCTGTC GTTGCTCTTT CTTCCTCTAC ATCGCCACAT TCTCTTGGAA 
GCGTCGCATC TTCTTCTCTG TTTCCTCACT CCTCCTTCGT GCTTCAGAAA 
AAACATCCGA TCAATGGGAC GAGCACGAGG ATGATTTCAC CAAAATGTGC 
CGCTTCTGAT GCAGCTCAAT TGATAAGCGC TAAAGAAGAT ATCAAAGTTC 
TTCTCCGGAC TAAGTTTTGC CATCCCATCT TGGTTAGATT GGGGTGGCAC 
GATGCTGGTA CTTATAACAA GAATATTGAG GAGTGGCCAC TGAGAGGTGG 
AGCTAATGGA AGTCTTAGGT TTGAGGCTGA GCTTAAGCAT GCTGCAAATG 
CTGGTCTGCT TAATGCTTTA AAGCTCATTC AGCCTCTCAA AGACAAGTAT 
CCTAACATCT CTTATGCGGA CTTATTCCAG TTAGCTAGTG CCACAGCAAT 
AGAGGAGGCT GGTGGTCCTG ATATCCCGAT GAAATATGGG AGAGTTGATG 
TTGTAGCACC TGAACAGTGT CCAGAAGAAG GAAGACTCCC TGATGCTGGA 
CCTCCTTCAC CAGCTGATCA TTTGAGAGAT GTTTTCTACA GAATGGGACT 
TGATGACAAG GAAATAGTTG CCTTGTCTGG TGCACATACC TTAGGGAGAG 
CCAGACCAGA CCGTAGTGGT TGGGGAAAAC CTGAGACAAA GTACACGAAA 
ACTGGACCTG GAGAAGCAGG AGGACAGTCA TGGACAGTGA AATGGCTCAA 
GTTCGACAAC TCTTATTTCA AGGATATCAA AGAAAAGAGG GACGACGATC 
TTCTGGTGTT ACCCACTGAT GCGGCGCTAT TTGAAGATCC TTCATTCAAG 
AACTATGCAG AGAAGTATGC TGAAGATGTG GCTGCATTTT TCAAGGACTA 
CGCTGAAGCC CATGCCAAGC TTAGCAATCT CGGTGCAAAA TTTGATCCTC 
CCGAGGGCAT AGTCATTGAA AACGTTCCAG AGAAGTTCGT AGCTGCAAAG 
TATTCTACGG GAAAGAAGGA GCTTTCGGAT TCGATGAAAA AGAAGATAAG 
AGCAGAGTAT GAAGCAATTG GAGGAAGCCC AGATAAGCCA TTACCCACAA 
ATTACTTCCT CAACATCATA ATTGCCATTG GCGTTTTGGT CCTCTTGTCC 
ACTCTCTTTG GTGGTAATAA CAACTCCGAT TTCTCTGGTT TCTAATTGAC 
AAATTATATA TTTTGATTTC TCTTACCTAC ATACATAATT ACGTGGTGAT 
CATATATTCC TTGCAAACAA AAACATCATT GTTAAAGTTT GCTTGAATAA 
AATCACCTTA TAAATAACAA AAAAA

Gene models with high sequence identity

  1. AT1G77490.1 [+] show detail - thylakoidal ascorbate peroxidase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-22
FPrintScan Plant ascorbate peroxidase 2.2e-16
FPrintScan Plant ascorbate peroxidase 2.2e-16
FPrintScan Plant ascorbate peroxidase 2.2e-16
FPrintScan Plant ascorbate peroxidase 2.2e-16
FPrintScan Plant ascorbate peroxidase 2.2e-16
superfamily Haem peroxidase 1.8e-75
ProfileScan Haem peroxidase, plant/fungal/bacterial 18.423
PatternScan Peroxidases heam-ligand binding site 0
Gene3D no description 1.6e-36
HMMPfam Haem peroxidase, plant/fungal/bacterial 2.5e-46

See the detailed result >

AT1G77490.1

Model type
Protein coding
Short Description
thylakoidal ascorbate peroxidase
Curator Summary
Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
thylakoidal ascorbate peroxidase (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: stromal ascorbate peroxidase (TAIR:AT4G08390.2); Has 7809 Blast hits to 7730 proteins in 1256 species: Archae - 55; Bacteria - 2313; Metazoa - 5; Fungi - 620; Plants - 3345; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL21-13-B21 introduced

  • F15907 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found