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  3. RAFL21-22-P13

RAFL21-22-P13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda20251)

full reading [+] show sequence

Nucleotide sequence: RAFL21-22-P13 - full reading 
ACTTGCGAGA GAGGAGAACC CTAATTTTCA ATTGTGGTCG AAAATTGGAA 
GAATGAGGAG GAGGAGGTGC GATCTTCAAC CGAAGAGAAC GAGAATGTGC 
GATCTTCAAC CGAAGAGAAC GAGTATGTGC GATCTTCCAC CGAAGCTGGT 
AGGGGAGAAG ATCCTCACGA GGATTCCGAT AACATCTCTG AGAGCGGTGC 
GATCCACTTG CAAATTATGG AACGCTTTAA CCAAAGATCG GGTTCTGGGT 
AAAGCAGCGG CGCAGTTTTT GGGGTTTATG ACGATGGATT CAAAGGTCTG 
TTCAGTTAGA TTCCATCTCC GTCGCAGCAA GGAGGAAGAA GAAGACACGA 
TGGATCTATC TATAAAGCAG GTAGATTTGC TTAATCAAGT CGAGATATCT 
AGAGTGTATC ACTGCGACGG CTTGTTGTTA TGCGTGGCTA AGGACAACTC 
GAGGGTCGTG GTTTGGAACC CTTATTTGGG GCAAACAAGA TGGATCAGAC 
CCAGAACAGA ATCCAACATA GGAGACAGCT ATGCTCTTGG ATACGACATC 
AACCGTAACC ACAAAATCTT GAGGATGGTG CAGACAAGAA ACGTTTCCGT 
TTACAGGTAC GAAATCTACG ACTTGCGCTC TAATTCATGG AGGGTTCTCG 
AGGTCACTCC CAACGGGGAA ATGGACCCTA ATCATCCCCT CTACGGCGTT 
TCTGTGAAGG GAAATACCTA CTTTTTTGCG CATGAGGATA GCAGCAGTGG 
TGAAATTGAT GAAGATGGCG ACATAATCGA TCTTGAAGAT TTCTTACTCT 
GTTTTGATTT TACAACAGAG ACATTTGGTC TGCGTCTGCC TCTTCCGTTT 
CACTCTACTA TCGATGCGAC TGTGACCCTC TCTTGTGTTA GAGACCAGCA 
GCTCGCGGTG CTATATCATA ATGAGGGTCT TCACAGTGAT GATCGGTTTA 
CCACAGTTGA GTTTTGGGTT ACTACTAGTA TTGAGCCCAA CTCTGTGTCC 
TGGAGCAAGT TTTTGACAGT GGATATGAGA CCATTGGCAC TCACTGGTGT 
TCGGTTTGAC AATGATATGG GTGCCACCTT CTTCATTGAC GAGGATGAGA 
AAGTTGCTGT GGTTTTCGAT CTAGACGGAT ACCTAAGCAC CGAGAGCGCT 
CGTTACCACA CCACTTTTAT CAGTGGAAAG GATGGATTCT TTAAACCTGT 
GACTCTAGGA GTAGCTCCCA ATGTCGGGGA ACCTTGTCCC AGAACCGGGC 
ATATTCCGAC TACATATCGT CCCCCGCTTG TCTGCTCGTC TACTTACCTT 
CCGAGTTTAG TGCAAGTCAA CCAACAGCGC AAAAGGAAAG AAAGACATGT 
TTAGTTTTCT GTTCCTTGCA GTTCTCAAGA CTGCTAGTCA ATTCTCAGTT 
ACATTTCCAT GTTATCTTTC TCCTCTTTTA GTTTCTCTTC TCAAACTAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT1G24881.1 [+] show detail - F-box family protein
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

Program Description E-value
HMMPfam F-box associated domain, type 1 5.3e-48
superfamily F-box domain, Skp2-like 9.8e-16
HMMTigr F-box associated interaction domain 3.2e-53

See the detailed result >

AT1G24881.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G25150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL21-22-P13 introduced

  • F00948 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found