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  3. RAFL21-30-F07

RAFL21-30-F07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda11997)

full reading [+] show sequence

Nucleotide sequence: RAFL21-30-F07 - full reading 
ACCAGTTTAA AAATGGCGGC TTTGATCCAG ACCATCCATG GTGGTGTGGT 
TGTTACCAGA ACCTTGACTC TTGTTTATCC TTCTACCTTT ACGTCCAGAC 
ACAAAGCTCT GAACCAGATG ACAAGTAGCA GTAACAGCGG CTTGCGACGG 
TTCCTGTTCA CTCCGCCTCA GCGGCTAAGC CAAGGTATCT GTTACTGGGG 
AGCAGAGCTA AGCAACAATG TGTCATGGAC TTACAAAACG AAAATGGTTG 
TTCGATCCAA GGCCGGAGCA GTGCCTCTGA TGAAGCATGG CGACCGGTTT 
CTCTCCTCTC TCTCGTCTCC AGCCTTAGCT GGTGATCCGT CAGCGATAAA 
CCGACACATT AAGAAGTTTG TGGCTGCTTC ACCCAAATCA GTTGCTCTCA 
ATGTCCTCTC TCATCTCCTC TCTGATCAAA CCTCCCATCC TCATCTCTCC 
TTCTTTGCTC TGTCTTTGTA TTCGGAAATT ACTGAAGCGT CGTGGTTTGA 
TTGGAATCCT AAACTCATTG CTGAACTTAT TGCTTTGCTC AATAAACAAG 
AAAGATTTGA TGAATCAGAA ACGCTACTTT CTACTGCGGT TTCGAGACTG 
AAGTCAAATG AAAGAGACTT TACTCTCTTC CTCTGCAATT TGGTTGAATC 
AAATTCTAAA CAAGGGTCTA TACAAGGTTT CAGTGAAGCA TCTTTTCGTT 
TGAGAGAGAT AATCCAAAGA TCATCATCAG TTTATGTCAA AACTCAAGCT 
TACAAGTCTA TGGTTTCTGG ATTATGTAAC ATGGACCAGC CTCATGATGC 
GGAAAGAGTT ATCGAGGAGA TGAGAATGGA AAAAATAAAG CCGGGATTGT 
TTGAATATAA GTCTGTTCTA TACGGCTATG GAAGATTAGG ATTGTTTGAC 
GATATGAACA GAGTAGTACA CAGAATGGGA ACAGAAGGTC ACAAAATCGA 
CACAGTTTGT TCAAATATGG TTCTCTCTTC CTATGGAGCT CATGATGCAT 
TGCCCCAAAT GGGTTCTTGG TTACAGAAGT TGAAGGGTTT TAATGTTCCT 
TTCTCCATAA GGACGTATAA CTCGGTCTTG AATTCTTGTC CTACCATCAT 
ATCAATGTTG AAAGACTTGG ATAGCTGTCC GGTTTCTCTT TCTGAACTGC 
GTACTTTTCT GAATGAGGAC GAAGCACTTC TGGTCCATGA ATTGACTCAG 
TCATCAGTTT TAGATGAAGC AATTGAGTGG AACGCGGTAG AGGGTAAGTT 
GGATTTACAT GGTATGCACT TGAGCTCATC GTATTTGATA TTGCTGCAAT 
GGATGGATGA GACCAGACTT AGATTTAGCG AAGAAAAGTG TGTAATTCCT 
GCAGAGATTG TAGTTGTTTC TGGATCTGGA AAGCATAGCA ATGTAAGAGG 
AGAGTCACCG GTGAAAGCGC TGGTTAAAAA GATAATGGTG CGTACTGGAA 
GCCCGATGAG AATTGACCGG AAGAATGTTG GTAGTTTTAT TGCCAAGGGA 
AAAACTGTTA AAGAATGGCT CTGCAAATGA AGATTTATAA CTGTATATTT 
TGATCACAAT TTGCTTAAGA TTGATCAGGA ATAAGTTTTG CTTGGAATCC 
AAATCAACTC TTGGTGTCAA ATTTTCCACC AGAACTAATC AGGTGAGTCG 
AAATTTTCTC TTTACACTCT TAAAATTACC TGCGTGGTAG TAAAATTCTG 
AATAGCTGGT TTTAGAATAA GAGAAATCTG AACAAAAATC ATTTCAGTTT 
TCAAGTATGT ATGTTAAACC CTAGAGCTCT GTGAAATTTT AACAATAGTT 
TGTTTGTTTC TGTTTCTGGT GTATCTTTAG CTATATTCCA TGAAGTTTCT 
AGTCTTGAAT AATGTGTATA GTTTATTTCA AGCAATGGCT CTGGAGCTTT 
AGTTTGTTTA AAAGTGCATC TGCTCTAGTC CTTTGATTTG GATAGCAAAT 
AAGTGAAAGT TCTTGTCCCC

Gene models with high sequence identity

  1. AT2G17033.2 [+] show detail - pentatricopeptide (PPR) repeat-containing protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
ProfileScan Smr protein/MutS2 C-terminal 20.233
ProfileScan Pentatricopeptide repeat 10.424
ProfileScan Pentatricopeptide repeat 7.991
HMMTigr Pentatricopeptide repeat 0.0000034
HMMTigr Pentatricopeptide repeat 0.00065
HMMPanther SNF1-LIKE PROTEIN KINASE/SALT INDUCIBLE PROTE 2.8e-16
HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.8e-16
HMMPfam Pentatricopeptide repeat 0.00048
HMMPfam Pentatricopeptide repeat 0.32
HMMSmart Smr protein/MutS2 C-terminal 3.2e-23

See the detailed result >

AT2G17033.2

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL21-30-F07 introduced

  • F03523 - Specific phenotypes were NOT observed.
  • F06103 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found