InterPro Scan Result: AT1G09570.1

SEQUENCE: AT1G09570.1 CRC64: D8B359713430744B LENGTH: 1122 aa
InterPro
IPR000014
Domain
PAS
SM00091[620-686]T 3.5e-09 SM00091 no description[750-819]T 0.00073 SM00091 no descriptionno description
TIGR00229[616-745]T 3.5e-13 TIGR00229 sensory_box: PAS domain S-boxsensory_box: PAS domain S-box
PS50112[618-688]T 20.308 PS50112 PAS[748-803]T 13.902 PS50112 PASPAS
InterPro
IPR001294
Family
Phytochrome
PR01033[133-155]T 1.5e-111 PR01033 PHYTOCHROME[233-252]T 1.5e-111 PR01033 PHYTOCHROME[318-339]T 1.5e-111 PR01033 PHYTOCHROME[432-452]T 1.5e-111 PR01033 PHYTOCHROME[517-536]T 1.5e-111 PR01033 PHYTOCHROME[550-568]T 1.5e-111 PR01033 PHYTOCHROME[621-637]T 1.5e-111 PR01033 PHYTOCHROME[640-655]T 1.5e-111 PR01033 PHYTOCHROME[713-730]T 1.5e-111 PR01033 PHYTOCHROME[733-753]T 1.5e-111 PR01033 PHYTOCHROMEPHYTOCHROME
InterPro
IPR003018
Domain
GAF
PF01590[218-401]T 4.3e-38 PF01590 GAFGAF
SM00065[218-412]T 7.3e-11 SM00065 no descriptionno description
InterPro
IPR003594
Domain
ATPase-like, ATP-binding domain
G3DSA:3.30.565.10[962-1114]T 6.4e-16 G3DSA:3.30.565.10 no descriptionno description
PF02518[1007-1115]T 2e-12 PF02518 HATPase_cHATPase_c
SM00387[1007-1119]T 2e-15 SM00387 no descriptionno description
SSF55874[962-1115]T 2.2e-14 SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
InterPro
IPR003661
Domain
Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
PF00512[898-956]T 1.6e-08 PF00512 HisKAHisKA
SM00388[895-959]T 1.3e-07 SM00388 no descriptionno description
InterPro
IPR005467
Domain
Signal transduction histidine kinase, core
PS50109[902-1119]T 36.569 PS50109 HIS_KINHIS_KIN
InterPro
IPR012129
Family
Phytochrome A/B/C/D/E
PIRSF000084[1-1122]T 0 PIRSF000084 Phytochrome, conventional typePhytochrome, conventional type
InterPro
IPR013515
Domain
Phytochrome, central region
PF00360[413-590]T 1.7e-71 PF00360 PhytochromePhytochrome
InterPro
IPR013516
Binding_site
Phytochrome chromophore binding site
PS00245[318-327]T NA PS00245 PHYTOCHROME_1PHYTOCHROME_1
InterPro
IPR013654
Domain
PAS fold-2
PF08446[70-185]T 5.6e-39 PF08446 PAS_2PAS_2
InterPro
IPR013767
Domain
PAS fold
PF00989[621-734]T 1.2e-22 PF00989 PAS[751-873]T 3e-22 PF00989 PASPAS
InterPro
IPR016132
Domain
Phytochrome chromophore attachment domain
PS50046[218-392]T 63.788 PS50046 PHYTOCHROME_2PHYTOCHROME_2
noIPR
unintegrated
unintegrated
coil[678-699]? NA coil coiled-coilcoiled-coil
G3DSA:3.30.450.20[613-752]T 2.6e-16 G3DSA:3.30.450.20 no description[765-873]T 3.2e-09 G3DSA:3.30.450.20 no descriptionno description
PTHR24423[612-1114]T 3.7e-19 PTHR24423 FAMILY NOT NAMEDFAMILY NOT NAMED
seg[13-24]? NA seg seg[755-766]? NA seg segseg
SSF55781[218-413]T 5.8e-06 SSF55781 GAF domain-likeGAF domain-like
SSF55785[618-732]T 9.5e-18 SSF55785 PYP-like sensor domain (PAS domain)[748-872]T 2e-11 SSF55785 PYP-like sensor domain (PAS domain)PYP-like sensor domain (PAS domain)
SEQUENCE: AT1G09570.1 CRC64: D8B359713430744B LENGTH: 1122 aa
InterPro
IPR000014
Domain
PAS
SMARTSM00091no description
 3.5e-09 [620-686]T  0.00073 [750-819]T   
TIGRFAMsTIGR00229sensory_box: PAS domain S-box
 3.5e-13 [616-745]T    
PROFILEPS50112PAS
 20.308 [618-688]T  13.902 [748-803]T   
Parentno parent
ChildrenIPR013655IPR013656IPR013767
Found inIPR001294IPR001321IPR003949IPR003950IPR011785IPR012129IPR012130IPR012226IPR012704IPR014285IPR014310IPR014409IPR015524IPR017181IPR017232
Containsno entries
GO termsMolecular Function: signal transducer activity (GO:0004871)
Biological Process: signal transduction (GO:0007165)
InterPro
IPR001294
Family
Phytochrome
PRINTSPR01033PHYTOCHROME
 1.5e-111 [133-155]T  1.5e-111 [233-252]T  1.5e-111 [318-339]T  1.5e-111 [432-452]T 
 1.5e-111 [517-536]T  1.5e-111 [550-568]T  1.5e-111 [621-637]T  1.5e-111 [640-655]T 
 1.5e-111 [713-730]T  1.5e-111 [733-753]T   
Parentno parent
ChildrenIPR009219IPR012129
Found inno entries
ContainsIPR000014IPR003018IPR003594IPR003661IPR013515IPR013516IPR013654IPR013767IPR016132
GO termsMolecular Function: G-protein coupled photoreceptor activity (GO:0008020)
InterPro
IPR003018
Domain
GAF
PFAMPF01590GAF
 4.3e-38 [218-401]T    
SMARTSM00065no description
 7.3e-11 [218-412]T    
Parentno parent
ChildrenIPR016132
Found inIPR001294IPR010113IPR012074IPR012226IPR014265IPR014525
ContainsIPR000614IPR013516
GO termsMolecular Function: protein binding (GO:0005515)
InterPro
IPR003594
Domain
ATPase-like, ATP-binding domain
GENE3DG3DSA:3.30.565.10no description
 6.4e-16 [962-1114]T    
PFAMPF02518HATPase_c
 2e-12 [1007-1115]T    
SMARTSM00387no description
 2e-15 [1007-1119]T    
SUPERFAMILYSSF55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
 2.2e-14 [962-1115]T    
Parentno parent
ChildrenIPR004358IPR020575
Found inIPR001241IPR001294IPR001404IPR002099IPR005467IPR005734IPR005737IPR005740IPR006290IPR008358IPR010193IPR010194IPR011186IPR011557IPR012129IPR014285IPR014525IPR014763IPR015434IPR015566IPR016380IPR016381IPR016781IPR017171IPR017202IPR017204IPR017205IPR017206IPR020667IPR022510
ContainsIPR014762IPR019805
GO termsMolecular Function: ATP binding (GO:0005524)
InterPro
IPR003661
Domain
Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
PFAMPF00512HisKA
 1.6e-08 [898-956]T    
SMARTSM00388no description
 1.3e-07 [895-959]T    
ParentIPR009082
Childrenno children
Found inIPR001294IPR005467IPR006290IPR008358IPR012129IPR014265IPR014302IPR014310IPR014409IPR014525IPR017055IPR017116IPR017181IPR017232IPR022510
Containsno entries
GO termsMolecular Function: two-component sensor activity (GO:0000155)
Biological Process: signal transduction (GO:0007165)
Cellular Component: membrane (GO:0016020)
InterPro
IPR005467
Domain
Signal transduction histidine kinase, core
PROFILEPS50109HIS_KIN
 36.569 [902-1119]T    
Parentno parent
Childrenno children
Found inIPR006290IPR008358IPR012129IPR014265IPR014285IPR014302IPR014310IPR014409IPR014525IPR016380IPR016381IPR017055IPR017116IPR017171IPR017181IPR017202IPR017203IPR017204IPR017205IPR017232IPR022510
ContainsIPR003594IPR003661IPR004358IPR011495IPR011712IPR016120
GO termsMolecular Function: two-component sensor activity (GO:0000155)
Molecular Function: protein histidine kinase activity (GO:0004673)
Biological Process: signal transduction (GO:0007165)
Biological Process: peptidyl-histidine phosphorylation (GO:0018106)
InterPro
IPR012129
Family
Phytochrome A/B/C/D/E
PIRPIRSF000084Phytochrome, conventional type
 0 [1-1122]T    
ParentIPR001294
Childrenno children
Found inno entries
ContainsIPR000014IPR003594IPR003661IPR005467IPR013516IPR013654IPR013767IPR016132
GO termsMolecular Function: photoreceptor activity (GO:0009881)
Biological Process: protein-tetrapyrrole linkage (GO:0017006)
Molecular Function: protein homodimerization activity (GO:0042803)
Biological Process: regulation of transcription (GO:0045449)
InterPro
IPR013515
Domain
Phytochrome, central region
PFAMPF00360Phytochrome
 1.7e-71 [413-590]T    
Parentno parent
Childrenno children
Found inIPR001294
Containsno entries
GO termsMolecular Function: receptor activity (GO:0004872)
Molecular Function: G-protein coupled photoreceptor activity (GO:0008020)
Biological Process: protein-chromophore linkage (GO:0018298)
InterPro
IPR013516
Binding_site
Phytochrome chromophore binding site
PROSITEPS00245PHYTOCHROME_1
 NA [318-327]T    
Parentno parent
Childrenno children
Found inIPR001294IPR003018IPR012129IPR016132
Containsno entries
GO termsMolecular Function: G-protein coupled photoreceptor activity (GO:0008020)
Biological Process: protein-chromophore linkage (GO:0018298)
Biological Process: regulation of transcription (GO:0045449)
InterPro
IPR013654
Domain
PAS fold-2
PFAMPF08446PAS_2
 5.6e-39 [70-185]T    
Parentno parent
Childrenno children
Found inIPR001294IPR009219IPR012129
Containsno entries
GO termsMolecular Function: G-protein coupled photoreceptor activity (GO:0008020)
Biological Process: protein-chromophore linkage (GO:0018298)
Biological Process: regulation of transcription (GO:0045449)
InterPro
IPR013767
Domain
PAS fold
PFAMPF00989PAS
 1.2e-22 [621-734]T  3e-22 [751-873]T   
ParentIPR000014
Childrenno children
Found inIPR001067IPR001294IPR003949IPR011785IPR012129IPR012130IPR012226IPR014285IPR014310IPR014409IPR016384IPR017426
ContainsIPR000700IPR001610
GO termsnone
InterPro
IPR016132
Domain
Phytochrome chromophore attachment domain
PROFILEPS50046PHYTOCHROME_2
 63.788 [218-392]T    
ParentIPR003018
Childrenno children
Found inIPR001294IPR009219IPR012129
ContainsIPR013516
GO termsMolecular Function: G-protein coupled photoreceptor activity (GO:0008020)
Biological Process: protein-chromophore linkage (GO:0018298)
Biological Process: regulation of transcription (GO:0045449)
noIPR
unintegrated
unintegrated
COILcoilcoiled-coil
 NA [678-699]?    
GENE3DG3DSA:3.30.450.20no description
 2.6e-16 [613-752]T  3.2e-09 [765-873]T   
PANTHERPTHR24423FAMILY NOT NAMED
 3.7e-19 [612-1114]T    
SEGsegseg
 NA [13-24]?  NA [755-766]?   
Creative Commons License RIKEN Center for Sustainable Resource Science
Contact: RARGE developers <>
  • RIKEN
  • Plant Science Center
  • Center for Sustainable Resource Science