InterPro Scan Result: AT2G17870.1

SEQUENCE: AT2G17870.1 CRC64: 28F6A32F4C48CFBF LENGTH: 301 aa
InterPro
IPR001878
Domain
Zinc finger, CCHC-type
PF00098[95-110]T 5.8E-4 PF00098 zf-CCHC[131-147]T 0.018999999999999996 PF00098 zf-CCHC[161-177]T 9.499999999999997E-4 PF00098 zf-CCHC[197-213]T 0.011 PF00098 zf-CCHC[225-241]T 0.011 PF00098 zf-CCHC[252-268]T 0.0032 PF00098 zf-CCHC[283-299]T 7.399999999999997E-5 PF00098 zf-CCHCzf-CCHC
SM00343[95-111]T 1.1000002989614837E-4 SM00343 ZnF_C2HC[131-147]T 7.29999789405563E-5 SM00343 ZnF_C2HC[162-178]T 1.799999516546772E-4 SM00343 ZnF_C2HC[197-213]T 5.0999988243997714E-5 SM00343 ZnF_C2HC[225-241]T 4.3999996743974664E-4 SM00343 ZnF_C2HC[253-269]T 6.20000124972815E-4 SM00343 ZnF_C2HC[283-299]T 6.80000200614765E-6 SM00343 ZnF_C2HCZnF_C2HC
PS50158[96-109]T 0.0 PS50158 ZF_CCHC[132-147]T 0.0 PS50158 ZF_CCHC[163-177]T 0.0 PS50158 ZF_CCHC[198-213]T 0.0 PS50158 ZF_CCHC[226-241]T 0.0 PS50158 ZF_CCHC[254-267]T 0.0 PS50158 ZF_CCHC[283-299]T 0.0 PS50158 ZF_CCHCZF_CCHC
InterPro
IPR002059
Domain
Cold-shock protein, DNA-binding
PR00050[13-28]T 1.699999222840494E-11 PR00050 COLDSHOCK[34-43]T 1.699999222840494E-11 PR00050 COLDSHOCK[49-67]T 1.699999222840494E-11 PR00050 COLDSHOCKCOLDSHOCK
PF00313[12-76]T 6.900000000000011E-20 PF00313 CSDCSD
InterPro
IPR011129
Domain
Cold shock protein
SM00357[12-77]T 6.300009462873058E-22 SM00357 CSPCSP
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140[13-75]T 9.000000000000002E-21 G3DSA:2.40.50.140 OB_NA_bd_subOB_NA_bd_sub
InterPro
IPR013084
Domain
Zinc finger, CCHC retroviral-type
G3DSA:4.10.60.10[95-139]T 1.6000000000000008E-41 G3DSA:4.10.60.10 Znf_CCH_retrovir[140-177]T 1.6000000000000008E-41 G3DSA:4.10.60.10 Znf_CCH_retrovir[198-241]T 1.6000000000000008E-41 G3DSA:4.10.60.10 Znf_CCH_retrovir[252-299]T 1.4000000000000063E-38 G3DSA:4.10.60.10 Znf_CCH_retrovirZnf_CCH_retrovir
InterPro
IPR016027
Domain
Nucleic acid-binding, OB-fold-like
SSF50249[3-78]T 2.800005042611E-22 SSF50249 Nucleic_acid_OBNucleic_acid_OB
InterPro
IPR019844
Conserved_site
Cold-shock conserved site
PS00352[24-43]T 0.0 PS00352 COLD_SHOCKCOLD_SHOCK
noIPR
unintegrated
unintegrated
PTHR23002[92-297]T 6.000016791901594E-40 PTHR23002 PTHR23002PTHR23002
SSF57756[71-109]T 5.499999426327584E-7 SSF57756 SSF57756[118-182]T 2.2999993566538005E-11 SSF57756 SSF57756[184-245]T 6.800002006147658E-11 SSF57756 SSF57756[246-301]T 4.899999517823589E-9 SSF57756 SSF57756SSF57756
SEQUENCE: AT2G17870.1 CRC64: 28F6A32F4C48CFBF LENGTH: 301 aa
InterPro
IPR001878
Domain
Zinc finger, CCHC-type
PFAMPF00098zf-CCHC
 5.8E-4 [95-110]T  0.018999999999999996 [131-147]T  9.499999999999997E-4 [161-177]T  0.011 [197-213]T 
 0.011 [225-241]T  0.0032 [252-268]T  7.399999999999997E-5 [283-299]T  
SMARTSM00343ZnF_C2HC
 1.1000002989614837E-4 [95-111]T  7.29999789405563E-5 [131-147]T  1.799999516546772E-4 [162-178]T  5.0999988243997714E-5 [197-213]T 
 4.3999996743974664E-4 [225-241]T  6.20000124972815E-4 [253-269]T  6.80000200614765E-6 [283-299]T  
PROFILEPS50158ZF_CCHC
 0.0 [96-109]T  0.0 [132-147]T  0.0 [163-177]T  0.0 [198-213]T 
 0.0 [226-241]T  0.0 [254-267]T  0.0 [283-299]T  
Parentno parent
ChildrenIPR013084
Found inIPR016713IPR017151
Containsno entries
GO termsMolecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
InterPro
IPR002059
Domain
Cold-shock protein, DNA-binding
PRINTSPR00050COLDSHOCK
 1.699999222840494E-11 [13-28]T  1.699999222840494E-11 [34-43]T  1.699999222840494E-11 [49-67]T  
PFAMPF00313CSD
 6.900000000000011E-20 [12-76]T    
ParentIPR011129
Childrenno children
Found inIPR012156IPR012751
ContainsIPR019844
GO termsMolecular Function: DNA binding (GO:0003677)
InterPro
IPR011129
Domain
Cold shock protein
SMARTSM00357CSP
 6.300009462873058E-22 [12-77]T    
Parentno parent
ChildrenIPR002059IPR011113
Found inIPR004476IPR011804IPR011805IPR012340IPR013223
ContainsIPR019844
GO termsMolecular Function: nucleic acid binding (GO:0003676)
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
GENE3DG3DSA:2.40.50.140OB_NA_bd_sub
 9.000000000000002E-21 [13-75]T    
ParentIPR016027
ChildrenIPR001059IPR002547IPR004150IPR011564IPR012309IPR013849IPR020189IPR022666IPR022967
Found inIPR000110IPR000289IPR000424IPR001208IPR001253IPR001884IPR002171IPR002312IPR002313IPR003512IPR004329IPR004522IPR004523IPR004524IPR004591IPR005570IPR005679IPR005680IPR005880IPR006032IPR008045IPR008046IPR008047IPR008048IPR008049IPR008050IPR011344IPR011768IPR011897IPR012156IPR012162IPR012751IPR013846IPR013970IPR014646IPR014647IPR016306IPR016411IPR017075IPR018032IPR020599IPR020780IPR020923
ContainsIPR003871IPR004365IPR007199IPR011129IPR013852IPR013955IPR015365IPR018104IPR018239IPR019844IPR019979
GO termsnone
InterPro
IPR013084
Domain
Zinc finger, CCHC retroviral-type
GENE3DG3DSA:4.10.60.10Znf_CCH_retrovir
 1.6000000000000008E-41 [95-139]T  1.6000000000000008E-41 [140-177]T  1.6000000000000008E-41 [198-241]T  1.4000000000000063E-38 [252-299]T 
ParentIPR001878
Childrenno children
Found inno entries
Containsno entries
GO termsMolecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
InterPro
IPR016027
Domain
Nucleic acid-binding, OB-fold-like
SUPERFAMILYSSF50249Nucleic_acid_OB
 2.800005042611E-22 [3-78]T    
Parentno parent
ChildrenIPR012339IPR012340IPR023113
Found inIPR000110IPR001566IPR001884IPR002312IPR002313IPR003750IPR004523IPR004524IPR004609IPR004665IPR004881IPR006308IPR010874IPR011370IPR011768IPR011897IPR012162IPR014464IPR015525IPR016798IPR017074IPR017084IPR018032IPR020599IPR020780IPR020873IPR020923
ContainsIPR002792IPR003029IPR003871IPR013852IPR015187IPR015188IPR018104IPR018239IPR019844IPR019979
GO termsnone
InterPro
IPR019844
Conserved_site
Cold-shock conserved site
PROSITEPS00352COLD_SHOCK
 0.0 [24-43]T    
Parentno parent
Childrenno children
Found inIPR002059IPR011129IPR012156IPR012340IPR012751IPR016027
Containsno entries
GO termsnone
noIPR
unintegrated
unintegrated
PANTHERPTHR23002PTHR23002
 6.000016791901594E-40 [92-297]T    
SUPERFAMILYSSF57756SSF57756
 5.499999426327584E-7 [71-109]T  2.2999993566538005E-11 [118-182]T  6.800002006147658E-11 [184-245]T  4.899999517823589E-9 [246-301]T 
Parentno parent
Childrenno children
Found inno entries
Containsno entries
GO termsnone