InterPro Scan Result: RAFL05-02-H10

SEQUENCE: RAFL05-02-H10_1_ORF2 CRC64: 5CAB0267511B8007 LENGTH: 60 aa
noIPR
unintegrated
unintegrated
seg[22-31]? NA seg segseg
SEQUENCE: RAFL05-02-H10_1_ORF3 CRC64: 3E85FCE2A072634D LENGTH: 58 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_2_ORF2 CRC64: D8945B0BCD8A5E73 LENGTH: 1072 aa
InterPro
IPR000014
Domain
PAS
SM00091[645-711]T 6.4e-09 SM00091 no description[776-845]T 0.14 SM00091 no descriptionno description
TIGR00229[642-770]T 1.8e-11 TIGR00229 sensory_box: PAS domain S-boxsensory_box: PAS domain S-box
PS50112[643-713]T 18.956 PS50112 PAS[776-832]T 13.677 PS50112 PASPAS
InterPro
IPR001294
Domain
Phytochrome
PR01033[167-189]T 2.1e-99 PR01033 PHYTOCHROME[267-286]T 2.1e-99 PR01033 PHYTOCHROME[352-373]T 2.1e-99 PR01033 PHYTOCHROME[462-482]T 2.1e-99 PR01033 PHYTOCHROME[547-566]T 2.1e-99 PR01033 PHYTOCHROME[579-597]T 2.1e-99 PR01033 PHYTOCHROME[646-662]T 2.1e-99 PR01033 PHYTOCHROME[665-680]T 2.1e-99 PR01033 PHYTOCHROME[738-755]T 2.1e-99 PR01033 PHYTOCHROME[758-778]T 2.1e-99 PR01033 PHYTOCHROMEPHYTOCHROME
InterPro
IPR001610
Repeat
PAC motif
SM00086[862-904]T 0.0022 SM00086 no descriptionno description
InterPro
IPR003018
Domain
GAF
PF01590[255-429]T 8.5e-39 PF01590 GAFGAF
SM00065[252-442]T 1.5e-09 SM00065 no descriptionno description
InterPro
IPR005467
Domain
Signal transduction histidine kinase, core
PS50109[928-1072]T 20.251 PS50109 HIS_KINHIS_KIN
InterPro
IPR013515
Domain
Phytochrome, central region
PF00360[443-619]T 6.1e-66 PF00360 PhytochromePhytochrome
InterPro
IPR013516
Binding_site
Phytochrome chromophore binding site
PS00245[352-361]T NA PS00245 PHYTOCHROME_1PHYTOCHROME_1
InterPro
IPR013654
Domain
PAS fold-2
PF08446[104-219]T 2.4e-40 PF08446 PAS_2PAS_2
InterPro
IPR013767
Domain
PAS fold
PF00989[646-760]T 2.3e-25 PF00989 PAS[776-899]T 7e-26 PF00989 PASPAS
InterPro
IPR016132
Domain
Phytochrome chromophore attachment domain
PS50046[252-422]T 66.417 PS50046 PHYTOCHROME_2PHYTOCHROME_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.450.20[630-761]T 4.9e-11 G3DSA:3.30.450.20 no descriptionno description
PTHR23283[58-741]T 0 PTHR23283 SENSOR HISTIDINE KINASE-RELATEDSENSOR HISTIDINE KINASE-RELATED
PTHR23283:SF4[58-741]T 0 PTHR23283:SF4 PHYTOCHROME CPHYTOCHROME C
seg[41-64]? NA seg segseg
SSF55785[649-760]T 2.9e-17 SSF55785 PYP-like sensor domain (PAS domain)[776-894]T 1.3e-11 SSF55785 PYP-like sensor domain (PAS domain)PYP-like sensor domain (PAS domain)
SEQUENCE: RAFL05-02-H10_3_ORF2 CRC64: D4A1B0377F2CD01E LENGTH: 57 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_3_ORF3 CRC64: EFC7C0F57AB9F69D LENGTH: 68 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_3_ORF4 CRC64: D0A4593C8F37A99A LENGTH: 72 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_4_ORF2 CRC64: C65F9EB96479F912 LENGTH: 55 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_4_ORF3 CRC64: 578681046AE28B16 LENGTH: 134 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_4_ORF4 CRC64: 4338E840780C92B7 LENGTH: 109 aa
noIPR
unintegrated
unintegrated
seg[1-11]? NA seg segseg
SEQUENCE: RAFL05-02-H10_4_ORF5 CRC64: 2A4DF89E074F28F5 LENGTH: 67 aa
noIPR
unintegrated
unintegrated
seg[44-53]? NA seg segseg
SEQUENCE: RAFL05-02-H10_4_ORF6 CRC64: 5FD0A82D49EC96B1 LENGTH: 54 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_4_ORF7 CRC64: 7577D3B7C0C8526E LENGTH: 56 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_5_ORF2 CRC64: 599DEC4A1038C301 LENGTH: 64 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_5_ORF3 CRC64: 950FB49D7C752361 LENGTH: 69 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_5_ORF4 CRC64: 7F0A7CFCF243E5CF LENGTH: 60 aa
No hits reported.
SEQUENCE: RAFL05-02-H10_6_ORF2 CRC64: 9B5395DA07791912 LENGTH: 75 aa
noIPR
unintegrated
unintegrated
seg[11-28]? NA seg segseg
Creative Commons License RIKEN Center for Sustainable Resource Science
Contact: RARGE developers <>
  • RIKEN
  • Plant Science Center
  • Center for Sustainable Resource Science