InterPro Scan Result: RAFL05-08-O16

SEQUENCE: RAFL05-08-O16_1_ORF2 CRC64: CCC6387C16632608 LENGTH: 50 aa
No hits reported.
SEQUENCE: RAFL05-08-O16_1_ORF3 CRC64: E1E0B728765C9FD2 LENGTH: 272 aa
noIPR
unintegrated
unintegrated
seg[17-28]? NA seg seg[58-82]? NA seg seg[97-148]? NA seg seg[163-175]? NA seg seg[193-203]? NA seg seg[219-237]? NA seg segseg
SEQUENCE: RAFL05-08-O16_2_ORF2 CRC64: E8C01E57D2706AD6 LENGTH: 53 aa
noIPR
unintegrated
unintegrated
seg[2-19]? NA seg seg[34-39]? NA seg segseg
SEQUENCE: RAFL05-08-O16_3_ORF1 CRC64: 442BA8884B9F9697 LENGTH: 314 aa
InterPro
IPR001878
Domain
Zinc finger, CCHC-type
PF00098[108-123]T 7.8e-07 PF00098 zf-CCHC[144-160]T 2.5e-05 PF00098 zf-CCHC[174-190]T 1.3e-06 PF00098 zf-CCHC[210-226]T 1.5e-05 PF00098 zf-CCHC[238-254]T 1.5e-05 PF00098 zf-CCHC[265-281]T 4.3e-06 PF00098 zf-CCHC[296-312]T 9.9e-08 PF00098 zf-CCHCzf-CCHC
SM00343[108-124]T 0.00012 SM00343 no description[144-160]T 8.5e-05 SM00343 no description[175-191]T 0.00021 SM00343 no description[210-226]T 6e-05 SM00343 no description[238-254]T 0.00051 SM00343 no description[266-282]T 0.00073 SM00343 no description[296-312]T 8e-06 SM00343 no descriptionno description
PS50158[109-122]T 10.790 PS50158 ZF_CCHC[145-160]T 10.526 PS50158 ZF_CCHC[176-190]T 10.691 PS50158 ZF_CCHC[211-226]T 10.263 PS50158 ZF_CCHC[239-254]T 9.175 PS50158 ZF_CCHC[267-280]T 10.460 PS50158 ZF_CCHC[296-312]T 10.493 PS50158 ZF_CCHCZF_CCHC
InterPro
IPR002059
Domain
Cold-shock protein, DNA-binding
PR00050[26-41]T 1.9e-11 PR00050 COLDSHOCK[47-56]T 1.9e-11 PR00050 COLDSHOCK[62-80]T 1.9e-11 PR00050 COLDSHOCKCOLDSHOCK
PF00313[25-89]T 9.3e-23 PF00313 CSDCSD
InterPro
IPR011129
Domain
Cold shock protein
SM00357[25-90]T 1e-21 SM00357 no descriptionno description
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140[23-90]T 6.9e-13 G3DSA:2.40.50.140 no descriptionno description
InterPro
IPR013084
Domain
Zinc finger, CCHC retroviral-type
G3DSA:4.10.60.10[131-195]T 4.6e-06 G3DSA:4.10.60.10 no description[197-258]T 0.00027 G3DSA:4.10.60.10 no description[264-314]T 0.0002 G3DSA:4.10.60.10 no descriptionno description
InterPro
IPR016027
Domain
Nucleic acid-binding, OB-fold-like
SSF50249[16-91]T 1.8e-20 SSF50249 Nucleic acid-binding proteinsNucleic acid-binding proteins
InterPro
IPR019844
Conserved_site
Cold-shock conserved site
PS00352[37-56]T NA PS00352 COLD_SHOCKCOLD_SHOCK
noIPR
unintegrated
unintegrated
PTHR23002[110-312]T 7.5e-44 PTHR23002 ZINC FINGER CCHC DOMAIN CONTAINING PROTEINZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
PTHR23002:SF11[110-312]T 7.5e-44 PTHR23002:SF11 CELLULAR NUCLEIC ACID BINDING PROTEINCELLULAR NUCLEIC ACID BINDING PROTEIN
seg[124-144]? NA seg seg[161-173]? NA seg seg[191-218]? NA seg seg[227-246]? NA seg seg[259-274]? NA seg seg[284-294]? NA seg segseg
SSF57756[95-122]T 0.00022 SSF57756 Retrovirus zinc finger-like domains[131-189]T 8e-10 SSF57756 Retrovirus zinc finger-like domains[197-252]T 3.1e-09 SSF57756 Retrovirus zinc finger-like domains[253-314]T 3.4e-11 SSF57756 Retrovirus zinc finger-like domainsRetrovirus zinc finger-like domains
SEQUENCE: RAFL05-08-O16_4_ORF2 CRC64: 1A7E93486B5F1C0F LENGTH: 76 aa
noIPR
unintegrated
unintegrated
seg[33-39]? NA seg segseg
SEQUENCE: RAFL05-08-O16_4_ORF3 CRC64: B8ECCBFB24437B1F LENGTH: 65 aa
noIPR
unintegrated
unintegrated
seg[49-61]? NA seg segseg
SEQUENCE: RAFL05-08-O16_5_ORF2 CRC64: E9C4EABA900B62E9 LENGTH: 63 aa
No hits reported.
SEQUENCE: RAFL05-08-O16_6_ORF2 CRC64: CDA7EF37C16B9A80 LENGTH: 242 aa
noIPR
unintegrated
unintegrated
seg[43-54]? NA seg seg[64-78]? NA seg seg[91-110]? NA seg seg[126-149]? NA seg seg[157-176]? NA seg seg[192-215]? NA seg segseg
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