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11-0001-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3834434 [Map]; Strand: w
      • AT5G11900.1 - [+] show detail - Translation initiation factor SUI1 family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-0001-1 - 5-prime edge
    TTTGTAGTGC CTCAAATTTT TTATTCTTCC AAGGGCTAAG CTGATTCACA 
    CAATCGAAAA GATGAAGATT TTTGTTTTAA CTTGAATTAT AAATTTATGG
    GTCTGTTCAA TTTGGTGATT ATGTTATGTT GGATTGTCAA TGCTTGTTGT
    GTAGAGTTTT ACGATTTTTT GGTACCCTTT ACACTTCTGT TTTACTGGTT
    ATGACAATGA GTTTAATTTG ATTTAAGACT TACTAATATT TGAGTTTGCA
    TACGAATTTT AAATTTGTCC AGAAGCAAAT GAGAAGGCAG CAGATAATGT
    TTCTGACAAA CTCCAGTCGG TGGGAATCTC TTCAGGTGGT GCTGATGGGG
    CACCATCTTC AGCTCANACT GGTAAGGAAC CGNGTCTATG TGNGTGCTTT
    TNNTTGNNCA TACTATNGCN TACNCNNNTN NGGNCTGNNC ATCNNTNTNA
    AAAATNCCNN NCTGNANGGN TGGAAACATN NNNAANGNNT NNGNNNNNNN
    GGGGANT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3834318 [Map]; Strand: w
      • AT5G11900.1 - [+] show detail - Translation initiation factor SUI1 family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-0001-1 - 3-prime edge
    ACTACAAACC TAAAATCAAA CGAGTTCTGA AGAACGGTCG AAAATTATAA 
    GATTAGGGTT TGATGGTACC TTTGAGGAGA TCAGGATAGA GATCTGGGGC
    GTTTTCGACG AGCCAGGGCT TACATCTAGC GAAATCGGGA CCGAATT

AT5G11900.1

Model type
Protein coding
Short Description
Translation initiation factor SUI1 family protein
Computational Description
Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR