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Mutant Lines
11-0017-1

11-0017-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 9086935 [Map]; Strand: w
- AT1G26260.2 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
  Distance: 0; Region: intron1 (5UTR)
- AT1G26260.1 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
  Distance: -169; Region: promoter
- AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
  Distance: -279; Region: promoter

GCAGAAACAG AACCCAGTTC AATAAAGCTT TTTGGTAAGA AAATTTGAAA 
GGAAAAGATA TTTGAAAAAT CGTAGAGAGA AAGTGGCACA GAATCTGAAA 
TTCTGACACN TTTTTACCAC GAATAATGAT TCTCTTTTGA AAAACATGAC 
TCAATGTTTT CTTTATCTTT TTCTCTGAAT TGAGGTTTGT TTGTACTTAA 
AGTATGCTCC TTTATCTACC GTTGACTGAT TCTACTCTTT TATTCTCAAC 
TTTTCTCTGA TTTGCTCGTG TGTTTACTTC AATTCCTCAG TTCTTCTGTA 
GAAAGTTGAG TTTCATGTGA TCAAAATTGG GGCTTGACTA CTTTTAAGAG 
AATGAGTGAC AAAGACGAGT TTGCCGCAAA GAAGAAGGAT TTGGTCAATA 
CGCCAGTGGA TTTGTATCCT CCGGAGAATC CAATGTTGGG TCCTTCTCCG 
ATGATGGATT CATTCAGAGA AACTCTTTGG CATGATGGTG GTTTCAATGT 
CCACACAGAT GCAGACACTT NCGTTAGAGG TNATAATAAT ATNGATATAC 
CTCTTGAAAT GGGTGGGAAT ATGGCTCAGT TCCNTGCAGA TTCAGGATTC 
ATTGANCNGT GCTGCAANGT NTTCTTTTTT TGGATGTGGT GAAATGATGA 
TGAACCAACA ACAATCNNCC CTNGGAGTGN CNGAATCNAC TNGGNTGGNC 
TNTTCAAAAT CNNCAGAATT CCNAN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 9086819 [Map]; Strand: w
  - AT1G26260.2 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
    Distance: -34; Region: promoter
  - AT1G26260.1 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
    Distance: -285; Region: promoter
  - AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
    Distance: -395; Region: promoter
Flanking Genome Sequence: 11-0017-1 - 3-prime edge
```
GTTTCTGCTG CAATAAAGAG AAGAGCGTTG ATGGTCTTTT TAGAGATGGA 
GAGTTAAAAA CGAGTTTAAG AAGAATGAAA AAAAAAAAGT NCCTGANTTN 
CCACCCCGGN CCGTCANCCN CCCNNNCCCT NNAAA
```

AT1G26260.1

Model type: Protein coding
Short Description: cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary: Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description: cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 2014 Blast hits to 2008 proteins in 104 species: Archae - 0; Bacteria - 3; Metazoa - 32; Fungi - 24; Plants - 1947; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G26260.2

Model type: Protein coding
Short Description: cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary: Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description: cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G26260.3

Model type: Protein coding
Short Description: cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary: Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description: cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR