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11-0037-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16832131 [Map]; Strand: c
      • AT5G42100.1 - [+] show detail - beta-1,3-glucanase_putative
        Distance: -912; Region: promoter
      • AT5G42100.2 - [+] show detail - beta-1,3-glucanase_putative
        Distance: -892; Region: promoter
      • AT5G42110.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-0037-1 - 5-prime edge 
    GCTTCTGTCA TTGCCGTCTC CACCGCTGCT CTCTCTTCTT CCTCCATTCT 
    TCCTCCAGTC TCCCCAAAGG TTTTTCTTTC TTTTTTAAGA TCTGCGATTT 
    CGACGATTTC AATTGTTCTG TGGTTTGAAA CTGAGATGTG GATATGAATT 
    GATCAGGTTT GGGAATCGAG GAAAACGAAT GGGTCGGACA ATTTCGAGCC 
    GAGGTTTGAT GGGTTAAGGT TCATAGAGAC GCTGGTCACA GCACACAGAT 
    GATAAGATTA CAAATACCAT TCTTCTTCTT CTTCTCTTGG GTGATGCAAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16832247 [Map]; Strand: c
      • AT5G42110.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0037-1 - 3-prime edge 
    ACAGAAGCGA CCACACCGCT TGAAACCTTC ATCTTCTTCT TCGGATC

AT5G42100.1

Model type
Protein coding
Short Description
beta-1,3-glucanase_putative
Curator Summary
encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd
Computational Description
"beta-1,3-glucanase_putative" (BG_PPAP); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, glucan endo-1,3-beta-D-glucosidase activity; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42100.2

Model type
Protein coding
Short Description
beta-1,3-glucanase_putative
Curator Summary
encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd
Computational Description
ATBG_PAP; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, glucan endo-1,3-beta-D-glucosidase activity; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42110.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR