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Mutant Lines
11-0045-1

11-0045-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 13193496 [Map]; Strand: w
- AT4G25990.2 - [+] show detail - CCT motif family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G25990.1 - [+] show detail - CCT motif family protein
  Distance: 0; Region: exon1 (CDS)

GTGGAGATTG AGAACGGAGG AGAGTTTGTC TCAGAGATTG TAGATGACGG 
TGAAGGAGTG TTGTTTGACG GCGGCGATTT CATCATTTCC AACTCGAAGC 
TATAGGCACA AGAGGACATT TTCACCTGTG GACGTTTGAT TAGAATCCGA 
GAAAAATCTT GATGACTGTT GAATTTGAGG TTAAAGTTAG TGTGTGTTTT 
TTAAGAAAAG GAAAAATATA AAGTCAGAAA GTTTTCGTAT GAAGTCTATT 
GTTAAACCCT AAACCCTATG ACAAAATCTT GTTTACTAAA TATAGCAAAA 
AGGTTAAAAC TTAAATGGGG AAAAGGTAAG ATTCAGTATA CTAAAAAGGA 
AACTCCTACA GAAAAAAGAA GAGAACATTT AAGATTAGAG AGAGGCAGAG 
AGGTCATGGA AGTCAGAATT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 13193380 [Map]; Strand: w
  - AT4G25990.2 - [+] show detail - CCT motif family protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G25990.1 - [+] show detail - CCT motif family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 11-0045-1 - 3-prime edge
```
ATCTCCACGA GAAGGCCACG AACTCCACGG AAACGTCCCA ACCAAACATA 
CGACGAAGCT GCGGCTCTCC TCTCCACCGC TTACCCTAAA ATCTTCTCTT 
CCAAGAAGGC AAAAACTCAG ATTTTCGGGA GTAATAAATC TCCTCTCAGT 
GATTACGACG AAGCT
```

AT4G25990.1

Model type: Protein coding
Short Description: CCT motif family protein
Curator Summary: chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes
Computational Description: CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G25990.2

Model type: Protein coding
Short Description: CCT motif family protein
Curator Summary: chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes
Computational Description: CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 1342 Blast hits to 1342 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1336; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR