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11-0050-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12977720 [Map]; Strand: c
      • AT1G35340.4 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G35340.1 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: -45; Region: promoter
      • AT1G35340.2 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: -66; Region: promoter
      • AT1G35340.3 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: -66; Region: promoter
    Flanking Genome Sequence: 11-0050-1 - 5-prime edge
    GTAGAAANTA NCATGGTCGA AGAAGAAGAA GATAGGATCC GGTGTNAATT 
    GAAATGAGAA ACGNGAAAGT GTCGTCCGGA GNTATATTGA CACTGGAANT
    AANNCANNTA NCGCANTAAC NACATNGCNN GGTTAAGTTA ACGAGTTTAA
    TAATCTTGGT TTAAAAGAAA TTTGAAAGCC CAATAGAGTC AAGTTGACGG
    AGATTTGACT TTCAACGATT TTAAAAGAAG GGAGTGATCG GACGGCTGAG
    ATTACTAAAG AGTGTTTTAT GACCGTTTTC ATTACCAGCT TAGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12977826 [Map]; Strand: c
      • AT1G35340.4 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G35340.1 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G35340.2 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G35340.3 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0050-1 - 3-prime edge
    TTTTCTACGG CTGAGCTTAA CGGAGAATCC CTGAATCCGA TTACTGCGAT 
    TCACATTTTC CCGATGACTT CCACTCTAAT CTCCTCAAAC CTCTCTTCCT
    CTTTCTTCCC AACCCAAAAT ATCCACCGAA TT

AT1G35340.1

Model type
Protein coding
Short Description
ATP-dependent protease La (LON) domain protein
Computational Description
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); Has 216 Blast hits to 216 proteins in 83 species: Archae - 0; Bacteria - 95; Metazoa - 1; Fungi - 14; Plants - 53; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35340.2

Model type
Protein coding
Short Description
ATP-dependent protease La (LON) domain protein
Computational Description
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35340.3

Model type
Protein coding
Short Description
ATP-dependent protease La (LON) domain protein
Computational Description
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35340.4

Model type
Protein coding
Short Description
ATP-dependent protease La (LON) domain protein
Computational Description
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111).
Link
InterPro Scan - TAIR