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11-0061-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3015779 [Map]; Strand: w
      • AT5G09730.1 - [+] show detail - beta-xylosidase 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-0061-1 - 5-prime edge
    GTCTTGGCGC TTTGATTAGC TGATGGTCGA ATTTAGTGTA GGTAAGCGCG 
    TCTGCGAAGG CGTATACGGT TTCTCCGGTG TAAAACCTGT AACTCCGACC
    CGGATACCCC TTTGATTTGT CGGGTCTCAT GTTCATATTT GACATCGGAA
    CTTTTTCCAC GTACGATTGA GGATACCACG TCATCGGCAA ATTTCCACCT
    ACCAGAAAAA AAATTACCGG TTAGAGAAAT TGCAATTTTA AAACCGAACC
    GGGAGATTAA AACCGGTTGA ATCTGTAGAA CAGAGTATTA CTCGGATTAT
    GACGTCCGAA GATAACGTCA GCAATGGCGA GACCACCGGC TTCACCAGGG
    TATCCGACCC ACATTATGCT TGTGATCTTT TTATCGTTCT TGGCGAATGT
    AATGTCAAAT CCTCCACCGG ACATGATAAC TAGCACCACC GGTCCTCTTG
    CTGCCATAGC AACTCGAGTC ACAAGCTCTT GCTGCTTTCC AGGAAGATAC
    AGGTCGACTC GGTCATGGCC CTCCCTCTCA ATTGATTGGT CTGCGCCCAC
    CACGAGCACA ACAGCATCCG CAGAAGCAGC CANATCCACG GCTGANCCTA
    TATCCGCATC TACNCAAGCC ACGTTACATC CCANNTGATA GGTANACNAC
    ACC

AT5G09730.1

Model type
Protein coding
Short Description
beta-xylosidase 3
Curator Summary
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational Description
beta-xylosidase 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9260 Blast hits to 8072 proteins in 1198 species: Archae - 63; Bacteria - 5600; Metazoa - 16; Fungi - 1569; Plants - 515; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).
Link
InterPro Scan - TAIR