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11-0078-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9838679 [Map]; Strand: w
      • AT2G23100.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0078-1 - 5-prime edge 
    TTTGGAATGT GCACCATAAC AACATCCCTT AATGCAAGAA TAATGTCCGT 
    AGCTAATGTC GATGGTTTTA CGACAAACTC CACAAGAAAA ATCACCGGAA 
    ATAAGAGAGG AAATGAGAGA CAGGCNGGTG TTGGTGGCNG GGTGATCTTA 
    ATGACACGAG GTAGATTAAT ACAAGCTCTA TGAACCATGT AGTTACAAGG 
    AAGACAAGCG TAAACTGGAT CATGAGCGTC ATTGAGAGAC AACCCACAAA 
    CATCACAAGG TAAAGGGATT CGTCTAGGAA AAAGAGTGAG AATGTGGCTG 
    TGGCTTTTTA GGTGAGTGAT AGTGAGAGGT GGTGGCTTTA TCGTACAAGT 
    GAAATTGAGG CTGAAGTTGC AAACAGAACA ATGATAGTAT ATATCTTCAA 
    AACGTTTCTG ACAACATTTG CATTTTCCAT AATATATATC TGATAGATCG 
    TTATCGTCAT CATCATCATC ATCGTCATCA TCATCAAGAT CAACATCATC 
    ATCATCATCA TCTTCAACAT CAAAAAAAGG ACTAAAAAAA CGAGCACGAC 
    GACGAAGAAG ACGACGACGA CCACCAAACT CATCATCACT GTCAAAAGAA 
    CCTTCTGAAT CAGAGGACGA CGATTCTCCC CATTCTTGAG GTATCTTAGA 
    GGTATCAAAA TTAGGATCTA AGGAGATGG

AT2G23100.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G42280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR