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11-0099-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11567825 [Map]; Strand: c
      • AT4G21780.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 126; Region: intergenic
      • AT4G21790.1 - [+] show detail - tobamovirus multiplication 1
        Distance: -1940; Region: intergenic
    Flanking Genome Sequence: 11-0099-1 - 5-prime edge 
    GANNNNANCT NNGAGTGGGA GTCNACTTGC GATNGGAGCG ATNCGGCTTT 
    ATGGGCNANG CCTCAGGTTA CCATACTACT GTACCATCAT TGAAGNCNNN 
    NANTTGAGCC TGAAGTNNAT NATNTATAAT GNNGACGCAC CAANNTGATC 
    NNANNAANNN NGAATCCCNG GGCCCATAAN CNCNCNTGCN CNTNTATCAT 
    TTTAAAAGTT CGAATATATG CTCATTGACA TTGTAACTTG TAAGTATGTA 
    ACACAATGAG ACATTATTTT AAATTTGAAA AACTGTATGT AGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2378128 [Map]; Strand: w
      • AT1G07690.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0099-1 - 3-prime edge 
    AAANNANGAA NGGNGGGGGG GGGGGNNNNN GACAAACAAA AAAANCNTTN 
    NNNCGNATTT NAAGCGGACG CAGGTNTTTT ACTGACCGNT ACCGACCGTT 
    TTCATCCCTG TCGNCTTCTN GTGTNTNGTC AATGTAGGAA ATGTACNGNA 
    TAANCATGAG AAAAGACTTT GCTATATATA GGAATTACTC TATNCTGCAT 
    ATCNCNCTAA ATGCTCACCT TNNTNTATTA CCAACCTGAT AATNGTATAA 
    CTCAGATNGN NGCNGGATGT GCTNTATGGA CCGATTGGNA GGCANGTCTT 
    TNTACTTNCA TNCTGATTNN NGGNGNGGAC NCGAAAAAGC CCCCANAATC 
    CAAAAAAGGA AAGNAAAAAA NNAANAGNTN AANCATNCCA GNNAGGANGN 
    AGNNCGNCGN GCNNNNAANA NGGGCNGGAG ANGCNNCGAG NANCCGNCNN 
    CNTAGNCNNG NAACANNGNN GGNGGTGNNN GNNTNGCGNA NNNNAGGNTG 
    NTGGGGGGNN GANACACANN NNACNACNCN NTGNCGNNAC NNAAANACCC 
    GNNACGNNNA TANNAATCCC CCNCCTGTAN NCTANANANC AGCANNGNGA 
    GGNCTCNCCC GNGCANGAAN ANTGANNNNN AGNGCGCCNC CNCNNNTNCA 
    NCNANNNCCA NNGCNNCNNG GGGNAGGATG NGGGGCGCNN NGAANAATAA 
    NCTANANACC CATCTTNCCC NGNAANGANA NNNNNTNNNN NNNGGTTTGG 
    TCCNNCTNNC ANACNCCCNC AANGAGNNGG NNGANNNGGN AGAGCNNNNC 
    NNNNANNNAA TANCNGNCNN CNCNCNANCN GNNNNATNAG NNGNANAAGA 
    AANCNGNACA CGNACAGCNA AGACCCCCGA CCCNCGTAAA AAGANAAAAC 
    CGNGACTNAA ANANAGANNN NGANAANGAA CAANCCCANN ACNNAANAN

AT1G07690.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21780.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21790.1

Model type
Protein coding
Short Description
tobamovirus multiplication 1
Curator Summary
encodes a host factor that is required for TMV virus multiplication.
Computational Description
tobamovirus multiplication 1 (TOM1); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR