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11-0100-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12568111 [Map]; Strand: w
      • AT1G34400.1 - [+] show detail - unknown protein; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bac...
        Distance: -1496; Region: intergenic
      • AT1G34405.1 - [+] show detail - transposable element gene
        Distance: 2730; Region: intergenic
    Flanking Genome Sequence: 11-0100-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTTGGATTAA GTCTAACCAA CTCTTGTACC GGTTTCATCG TCTTTGTCCC
    TCAGACTTAG ATCGATCCTT TACTCGGTCA AGACATGCAT ATGTTCGCTA
    ACCATTCTAA GCCAAACAAT CGCATATTCC TTTATCCTAC TTTCAGTGTC
    AATTACCAAA CGTCTATCTT AACTAATAAG CTAGATCGTT ACATACCTTG
    GCCAATATGC NGGATTTGAT TCCTTAGCCC GTTTGTCGCC TTACTCCATT
    CGTTCAACGA CTCATATCCG ATCGTGAATT GATGAACCAA TCCCTATCGT
    TACTTAGCCA TACAACCAAC CAACCCCACT GGTCTAAGTA CAACGATAGA
    GATTGGGATC GTACGATTCC CTTGGTTCAC GATGGCCGAA TCAAGCTCTT
    GGCTTATTGG TCCATTCGTT CTCCAAACGT ACGCCCCTCC GGCTACATGG
    TGGACGATTG AGCCCTCGGC TTATAAAACC ATCCATGTTT CCGTTTCGGT
    CGTTTAACAC TATGACCGCC CACGGTTTAC TAACCGTTTA CCCGTCCGGT
    CCATGGTGGT CGATAAAGCT

AT1G34400.1

Model type
Protein coding
Computational Description
unknown protein; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G34405.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 4.8e-111 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR