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Mutant Lines
11-0101-1

11-0101-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 37596 [Map]; Strand: w
  - AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 11-0101-1 - 5-prime edge
```
GTTATAGGAA TCCTAGAAAC TGCTCATAAT GTAAACTGTT ATACCCTTGA 
GAGTAGCCAT GGAGGAGACA AGTATGCAAT CTGACTTATC ATCTCACCGG 
GAACTCCCCG GAGAAGTCAT CGTTCCCGGA AATAATCAAA TCGGAAGCAA 
AACAAAAAAA AATCTCTAAA AATAAATTTA AAAAACAGAG AGAAGAAGGA 
AGAAGATAAC NTGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGGAAG 
ACTGTTTTAG GCTGAAGAAG ACTGGAAGAA GAAGAAGAGA AGCCAGAAGC 
ANTCTCAGCC ACAACAATTT TTCCCCTAAT TTTTGGAAAA ATTTTAATTG 
AAAAGTTTAT TTGAGGCTGG AACAGCACCN NGGGTATAAA TGGAAAAAAC 
AGAAGTCATC GCAGATCGAC ACGTGGTGAT ATTGTAGNGG CTGTCTACTG 
CACTTTTTGG TATATCTCAA GTTGCTTNTC TACGAGCCAN AAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 37480 [Map]; Strand: w
  - AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron1 (5UTR)
  - AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron1 (5UTR)
  - AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron1 (5UTR)
  - AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 11-0101-1 - 3-prime edge
```
CCTATAACAT ACTAAGATCT CTGTTTGGCT GCTGAGAAAC TTATAGAAGC 
GATTAACTAA ATCTTATTAG CTCTAAAAGT TAGCATAAAT GATACGAATC 
TGGTGATTGA TTACTGATAT GAAGATTTGT GAAGGTTTTG GCCTGCAGGT 
GGATTCGTTT GGGTGAGGCT TTTGTGAATA ATAATAAAGG GAATT
```

AT1G01060.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.3

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.4

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01060.5

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description: LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1).
Link: InterPro Scan - TAIR