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11-0121-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18070620 [Map]; Strand: w
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0121-1 - 5-prime edge
    GCAATACCTT GGGTCTCCGA ATGCCTCGCA CGCGCTACGG CAAGCAACAC 
    CGTTCCCATT CCCACGCGTC ACCAGCTTTA GGTCTCTGGG ACACGCGCCG
    TTCAAGTCCA CGAGACACCC GGTGGCTCCG CATCCTCCAA TGACGATTTT
    CTTGGGCAAG ATTAGCATCG GGAGATTGTA ACCGTCGACG AGGCTAACGT
    CGTAAAAATC TAGTCCTCCT GTGCCATTGA GAGTAAACTC GGCGAGAGTT
    GCTGGAGGTT TAGCTCCGGA GCCTGAACAT TCGACTTTTC CCGAGCCGCA
    ATCTCCGGTT AAGCAGACGA AAGAACCTGA ACTCCGATCT TGTGAACACA
    AGGTTCGTGC CCAGAGACGA CCGGACCACG ACTCTGGTAT TGCGACGGTT
    TTAGATTTTC CTCTAGAGAG ACGAAAGCCA GTTGTGGGGA GCGGCGCAGA
    GTTAGCACCA GAGAGCAAAC CGGGCCATAT CGTGTTCCGG CAACGATTCG
    TGATCTTGAA CGAAATTGGC TCAACTGCTG CCATGTGAAA CCAATTCAAT
    CAAAATCGTG TAAAGATTGT TAAACTCGAT AGTCAAGCAA TAAAGAAGCA
    AGGAATTAGA CAGCGATTAT TGACCTGAAA GAGATGAGAC AAAAGCCAGG
    ATCATAAACA AGAGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18070504 [Map]; Strand: w
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0121-1 - 3-prime edge
    GGTATTGCTG CAGCGATGCG TACGCCACGC CGGACACGTG TCAGCCTTCG 
    GTTTACTCGC TCTTCTTTAA GCATGCGTGC CCACGAGCAT ACAGCTACGC
    CTATGACGAT AAGACGAGCA CTTACACTTG CGCCACCGGA GCCGATTACN
    TTCATCATCT TCTGTCCGCC ACCGTATACA AGGTGAGATA TTGACCGTTT
    TGCCCCTCTG TTCGCTTTGG AATATGCTAG GGATGTTTCT TGTTATTTAG
    TATATGAGCA GGAATCTAAT CTGAGCCACA CTGTTGATTA TATGGAATTT
    AGCTAACTTA GTTACTCGTT ATGATTTGTA GTCTTTTAGA TCATATGATC
    ATCTTCTATA AGCATTTGAT TAAGATTGTA GTGTCTACTA GAAGCATTTG
    GTATGATTAT AAATGATTGT AAAGGTCTAC TATAAGCATT TGGTATGAGA
    AAGTAGTGTT GATTAAAAGG GTTTTGTTTT AATGGTTGGA AAAGCGGGTA
    GCAACAGTTG GATTGAGTTC GACAAATATA GATTGAAGTG CTCCATTGTT
    ATAAATGTAC TTAGGTGTAA TGAGCTTAGT AAGTTGTTGA CTATGAGTTT
    TGTTTTGCAG CGAGAAGCT

AT4G38670.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1594 Blast hits to 1578 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 72; Plants - 1416; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.2

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1592 Blast hits to 1576 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 55; Fungi - 72; Plants - 1413; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.3

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR