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11-0123-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4458572 [Map]; Strand: c
      • AT5G13810.1 - [+] show detail - Glutaredoxin family protein
        Distance: 1553; Region: intergenic
      • AT5G13820.1 - [+] show detail - telomeric DNA binding protein 1
        Distance: -2322; Region: intergenic
    Flanking Genome Sequence: 11-0123-1 - 3-prime edge 
    GGCATTCATG TCTTGTCTTA ATTGGTATGC TAAATATTAT TCCAACCGTT 
    AATATAAATA TTTAGAGTTA TGATTTGACT AAAAACATTA ATTAAAATAT 
    GTATATTTCG TAATAGTATT TCAAGTGTTA GTGTGCACTA ATTTAAATGA 
    TTGATTTTTC TTGTAAGAAT ATTTCAAACT TTGAAATTAA CTCTAGAAAT 
    CTTATGTAAT GAAAACAAAA CGAAAGTATA TAGAATCACG ATGAGATTAA 
    CTGGCTAAAA AGTAATCATC TTTCATACAA ATTTGCTATA CATTTTTTTA 
    ATAAGGACTT CTCTTTTAAT GTGTAGGAAA GATGAAATCA AAACACACCT 
    ATAGATC

AT5G13810.1

Model type
Protein coding
Short Description
Glutaredoxin family protein
Computational Description
Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT3G57070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13820.1

Model type
Protein coding
Short Description
telomeric DNA binding protein 1
Curator Summary
Encodes a protein that specifically binds plant telomeric DNA repeats. It has a single Myb telomeric DNA-binding domain in C-terminus that prefers the sequence TTTAGGG.
Computational Description
telomeric DNA binding protein 1 (TBP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: chromosome, telomeric region, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin supergroup (InterPro:IPR019955), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 9 (TAIR:AT3G12560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR