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Mutant Lines
11-0131-1

11-0131-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 23454492 [Map]; Strand: w
  - AT5G57930.1 - [+] show detail - Arabidopsis thaliana protein of unknown function (DUF794)
    Distance: -112; Region: promoter
  - AT5G57930.2 - [+] show detail - Arabidopsis thaliana protein of unknown function (DUF794)
    Distance: -112; Region: promoter
Flanking Genome Sequence: 11-0131-1 - 5-prime edge
```
CAATGTTAGT TTTGGTTAAT ATCCTAAATT CAAATTGGAA AGAAAACATT 
AAAGGCCGGA TCGGTTATAC TACTGTGGAA TTTGGAAACA AATGTTATTA 
TAAGTGGGCC TAATGGGAAC TTCTGCCCAT TAAAGGCCCA TTATTTGAAC 
TTATTAGCTT TAAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23101432 [Map]; Strand: c
  - AT5G57090.1 - [+] show detail - Auxin efflux carrier family protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 11-0131-1 - 3-prime edge
```
GAATGTACGG AGACTTCTCC GGTAACCTAA TGGTGCAGAT CGTGGTGCTT 
CAGAGCATCA TATGGTATAC ATTAATGCTC TTCTTGTTTG AGTTCCGTGG 
CGCTAAGCT
```

AT5G57090.1

Model type: Protein coding
Short Description: Auxin efflux carrier family protein
Curator Summary: Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.
Computational Description: ETHYLENE INSENSITIVE ROOT 1 (EIR1); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57930.1

Model type: Protein coding
Short Description: Arabidopsis thaliana protein of unknown function (DUF794)
Curator Summary: ACCUMULATION OF PHOTOSYSTEM ONE 2
Computational Description: ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 141 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G57930.2

Model type: Protein coding
Short Description: Arabidopsis thaliana protein of unknown function (DUF794)
Curator Summary: ACCUMULATION OF PHOTOSYSTEM ONE 2
Computational Description: ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 139 Blast hits to 117 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR