1. Home
  2. Mutant Lines
  3. 11-0136-1

11-0136-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1314048 [Map]; Strand: c
      • AT3G04780.1 - [+] show detail - Protein of unknown function (DUF1000)
        Distance: -958; Region: promoter
      • AT3G04790.1 - [+] show detail - Ribose 5-phosphate isomerase, type A protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0136-1 - 3-prime edge 
    ATGGTGATGG CAAGCCTTAT GTGACTGATA ACAGTAATTA CATTATTGAT 
    TTGTATTTTA AGACTCCTTT GAAGGATGGA TTCGCTGCGG CCTAAAGAGA 
    TTGGGAAGTT TCAAGGAGTG GTGGAGCATG GTCTGTTTCT CGGAATGGCT 
    ACCTTCTGTC ATTATCGCTG GAAAGAATGG CGTTGAAGTT ATGACCAAGT 
    GAGGTTAAAA GTTCAATCTT TCTCTTCTTC TTTGATTGAC AAATTTTTCT 
    CCTTTGTAAA ATTATCAATT GAGTTTTTAT GTGAGATCAT TTCAATTTCG 
    TGAATT

AT3G04780.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1000)
Curator Summary
Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.
Computational Description
CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Proteasome-interacting thioredoxin-like domain, C-terminal (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1000) (TAIR:AT2G25950.1); Has 606 Blast hits to 606 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 186; Plants - 75; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04790.1

Model type
Protein coding
Short Description
Ribose 5-phosphate isomerase, type A protein
Computational Description
Ribose 5-phosphate isomerase, type A protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235; Bacteria - 3572; Metazoa - 110; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).
Link
InterPro Scan - TAIR