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11-0179-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2229711 [Map]; Strand: w
      • AT4G04470.1 - [+] show detail - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
        Distance: -431; Region: promoter
      • AT4G04480.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0179-1 - 5-prime edge
    NNANTAANGG CTNCNTTGNA GGTNTNANGA TTANTTCTTN CGCNNTNTTC 
    TTCTANNNCN ACGACCTANA GCNGCTAGCT TTCAATCCCG AAGCTACCGA
    AATTTCACGT CTCGGTTCCG AAAATACCNG ACTTTATCGG TTAAAGAACC
    GAGCTTTGAG TTTGTAGAAA GTCTTCCTCT TTCGTTGAAA CAAAAGAGAG
    GTTCTGATTC TATCCAAAGA ACTCGTCTCA ATGCGGTTCT TGAAGAAGTT
    ATGGATAGGA TTGAGATGCA CAAGAACATC GGAGATCAAC GTAACAATTG
    GAACTCTTTA CTGCTCAATT CTGTCAACAT GATTACTCTC ACTGCCGCTT
    TGATGGCCGG AATAGCCTCG GTTAACGGTC ACGGTGTAGA TTCTGTAACC
    GCTGTGAAGA TAGCTTCAAC GGTGTTGTTA ACATCTGCGA CGGGTTTTGC
    TGCCTTGATG AGCAAGATTC AACCTTCGCA GCTAGCTGAA GAACAGAGGA
    ACGCGACGAG GCTGTTCAAG AAGCTGAGAG TCGAAATCGA AATGTTTCTG
    AGAGAAAACG AGGAGATCGA AGAAGAAGAT GTTAAGGAAG TGATAAAGAG
    AGTGTTGTCT CTAGATAAAG CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2229598 [Map]; Strand: w
      • AT4G04470.1 - [+] show detail - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
        Distance: -318; Region: promoter
      • AT4G04480.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; ...
        Distance: -51; Region: promoter
    Flanking Genome Sequence: 11-0179-1 - 3-prime edge
    NNGTGANNCG GGCGNTCNGG TNATNNTNNN NGNNNAGTAT CNATCCGGAC 
    ATTTGNGATT GTGTTTGATG AATGAAGAGA GAAATGTTAT GTGTGGTGTT
    ATATATAGGT TTAAGATGAT AGGCATAAAA CAAAACAAGA AAATTTAAGG
    AATTGAATTG ACCAAAGAGA GAATTATTGA CCAAAGACCA ATTAGGCTTT
    GATAGATTCT CCTGTGACGG TTTTTGGTCT AACCGTAAAG CTAGCCTCCC
    AATTTTACCC GCCATCCTCG TAGAACGAGT CTTAATTACA TCTAAACCGG
    CTCGGTTTAT ATTGGTTTGA TTAAACCGGT TCGGTTTTGT TTTGTAGGTA
    GGAATTTGGT CAAATTGCTT AAGACACAAA TGACAAAACA CTAGAGAGAG
    TATCGAAGAG AAGAATCCAA AAAAATGGGA TCTTCACCAC CGAAGAAGAC
    GACTCTGCAA CGGTACTTGT CACAGCTTCA ACAACATCCT TTAAGAACAA
    AGGTTGAAAC TTTTCTTCTC CTATTGTTGA TTTGAAGCGA TTGATGTAGT
    TTTCTGGGGT GGTTTCGTTT TCTTGAGATT AGGTTTAGTT TCATTGATTG
    AGAGACGATG ACGTTGTTTT TCGATTGAAG NTTTTGTTTT TTAACCTANC
    CAATTTCATA ATCTGATTNT TTGANAGTAT TCTTNACTCT GTTTNCANGT
    NGTTGGAATT ACCACC

AT4G04470.1

Model type
Protein coding
Short Description
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator Summary
22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.
Computational Description
PMP22; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G14305.1); Has 1209 Blast hits to 1209 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 362; Plants - 267; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04480.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR