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11-0179-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2229711 [Map]; Strand: w
      • AT4G04470.1 - [+] show detail - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
        Distance: -431; Region: promoter
      • AT4G04480.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0179-1 - 5-prime edge 
    NNANTAANGG CTNCNTTGNA GGTNTNANGA TTANTTCTTN CGCNNTNTTC 
    TTCTANNNCN ACGACCTANA GCNGCTAGCT TTCAATCCCG AAGCTACCGA 
    AATTTCACGT CTCGGTTCCG AAAATACCNG ACTTTATCGG TTAAAGAACC 
    GAGCTTTGAG TTTGTAGAAA GTCTTCCTCT TTCGTTGAAA CAAAAGAGAG 
    GTTCTGATTC TATCCAAAGA ACTCGTCTCA ATGCGGTTCT TGAAGAAGTT 
    ATGGATAGGA TTGAGATGCA CAAGAACATC GGAGATCAAC GTAACAATTG 
    GAACTCTTTA CTGCTCAATT CTGTCAACAT GATTACTCTC ACTGCCGCTT 
    TGATGGCCGG AATAGCCTCG GTTAACGGTC ACGGTGTAGA TTCTGTAACC 
    GCTGTGAAGA TAGCTTCAAC GGTGTTGTTA ACATCTGCGA CGGGTTTTGC 
    TGCCTTGATG AGCAAGATTC AACCTTCGCA GCTAGCTGAA GAACAGAGGA 
    ACGCGACGAG GCTGTTCAAG AAGCTGAGAG TCGAAATCGA AATGTTTCTG 
    AGAGAAAACG AGGAGATCGA AGAAGAAGAT GTTAAGGAAG TGATAAAGAG 
    AGTGTTGTCT CTAGATAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2229598 [Map]; Strand: w
      • AT4G04470.1 - [+] show detail - Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
        Distance: -318; Region: promoter
      • AT4G04480.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; ...
        Distance: -51; Region: promoter
    Flanking Genome Sequence: 11-0179-1 - 3-prime edge 
    NNGTGANNCG GGCGNTCNGG TNATNNTNNN NGNNNAGTAT CNATCCGGAC 
    ATTTGNGATT GTGTTTGATG AATGAAGAGA GAAATGTTAT GTGTGGTGTT 
    ATATATAGGT TTAAGATGAT AGGCATAAAA CAAAACAAGA AAATTTAAGG 
    AATTGAATTG ACCAAAGAGA GAATTATTGA CCAAAGACCA ATTAGGCTTT 
    GATAGATTCT CCTGTGACGG TTTTTGGTCT AACCGTAAAG CTAGCCTCCC 
    AATTTTACCC GCCATCCTCG TAGAACGAGT CTTAATTACA TCTAAACCGG 
    CTCGGTTTAT ATTGGTTTGA TTAAACCGGT TCGGTTTTGT TTTGTAGGTA 
    GGAATTTGGT CAAATTGCTT AAGACACAAA TGACAAAACA CTAGAGAGAG 
    TATCGAAGAG AAGAATCCAA AAAAATGGGA TCTTCACCAC CGAAGAAGAC 
    GACTCTGCAA CGGTACTTGT CACAGCTTCA ACAACATCCT TTAAGAACAA 
    AGGTTGAAAC TTTTCTTCTC CTATTGTTGA TTTGAAGCGA TTGATGTAGT 
    TTTCTGGGGT GGTTTCGTTT TCTTGAGATT AGGTTTAGTT TCATTGATTG 
    AGAGACGATG ACGTTGTTTT TCGATTGAAG NTTTTGTTTT TTAACCTANC 
    CAATTTCATA ATCTGATTNT TTGANAGTAT TCTTNACTCT GTTTNCANGT 
    NGTTGGAATT ACCACC

AT4G04470.1

Model type
Protein coding
Short Description
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator Summary
22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.
Computational Description
PMP22; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G14305.1); Has 1209 Blast hits to 1209 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 362; Plants - 267; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04480.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR