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11-0189-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7333002 [Map]; Strand: c
      • AT5G22110.1 - [+] show detail - DNA polymerase epsilon subunit B2
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-0189-1 - 5-prime edge
    GANAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCTCTTC ACAGAGAATA CTATAATTTT GGCAGAAGGC
    GAAATGCAGG TTAACGGTAT CTTTCAGGTA ATTAGAATTG AAGGTGGCAA
    TTTTGGGCCT TTCTCTCCCC CATTCTGAGT TAATTACNTT TTTAACTAGG
    GAGATATTTG TATAATTTGC TGAGGTGCAC ATTCATAGAT TTTACGATTT
    TGTTTTATTT TTCATGTTGG GGTCAAGATA TTAGGCTATT AGCTATATGA
    AGGATCATAG AACTAAGTCA TGTATAGGGT CCTTTCTGTG ACAAAACATA
    CGTACACCTG TCTCCAATAA ACACTTGATC AGATTGCCTG TAACAAAGCT
    CAGTTTTTCA TAATATGTTC TTTGACCAAC TCATCCTCTT CTAAAAGTGT
    ATTCTCATCT TGTGGTGAAG GTGATTACAT GTGGATTTCC TCCCTTAGAA
    GACAGGGACA AAACACTAAA GGCGCATTCT GAATATGATT TCTTCGGAGG
    CGGCACACTA ACTAAAGAAG AGATGGTAAT CTTTGATTCG TTGTTTGTAC
    TCGGATTGAG AATTTTGTAA ATTTTCAATG CAATCCCTTA CATAGTAGGT
    AAACCACACT AAAAATAATG TGTTTTTTGC CTGCCAACAG ATTAAACTTG
    CAGACCTTGA AAGACAAGCG GTGAATGACA CATTTGTCAT ATTGTCTGAC
    ATATGGTTGG ACGACNAANA GGTGAGTTGG TGTACCAAGT ACTCTATTTA
    NCAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1029470 [Map]; Strand: w
      • AT4G02320.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -3352; Region: intergenic
      • AT4G02325.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 212; Region: intergenic
    Flanking Genome Sequence: 11-0189-1 - 3-prime edge
    CTTTGGTNGA AACATANNTA NATACTTTCA ACTAACGCAT NNGACTTCAT 
    TGAGAGAAAA AGTAGACTGA AAAAAAGAAC TCCACGTGGT AGGATTGAAT
    TCGATTCTTA TTTGCAGGTT CTAGCAGTCA AATCGATAAT AAACTCATTT
    ACTAAATGGA GTTTAACCCG TAATTCTAAA AACAAGTACT ATATAAGTAA
    CGTTAATGAA AAAGAATTGC GCCATACTTT GAGTTTAGCG TGAAAACATT
    TCGCCCAAAA AAGAAAGTGA CAGGTACAAA AATGTAATGA AAATGGAGAA
    AGACGGCATG CATAATGCAT TCTCTTACGG TCTTACCTTT TTCACTTGTC
    ACAACTTGTA TGCCGACATA ATTATAGACA GACCAAACGT TGCGCATTAT
    GGGTAGCATT GAAATTCCAT ATGAAGAAAC GTATTTTTTT TTCTTTTTTT
    GCTAACATTC NAAAAAAATN TTCACGTTCA CGTANCANNA ANTTCAANCA
    NTGATNGAAA AAAAAATTNT NTTGNTTAAA AAAAGTCCNT CANTNTCGTT
    NTAAAATNGA TTTTTTTTNG TGGATCATAA TNAACCCTAT TTTTANCCAT
    AACTTACCCN CANAGNCTTN AAACGGTNGG CNTGCTTNNA AAAAAATTTT
    GGGNNAAAGT TCGGGACCTT TTTACNATTT TTTTTNANTA TAAANTGGNG
    GCTAAANCNT NTTTTTTNTA NNGTNNAAAN TCCTAANAAC NATGTCCCAT
    NAAATTTTGT ATTNGGGGGG NCCCNCGTGT GTTTCNANTG GNTTTNAANC
    CCGGGGG

AT4G02320.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02300.1); Has 2764 Blast hits to 2709 proteins in 322 species: Archae - 6; Bacteria - 570; Metazoa - 1; Fungi - 200; Plants - 1958; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02325.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22110.1

Model type
Protein coding
Short Description
DNA polymerase epsilon subunit B2
Curator Summary
Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.
Computational Description
DNA polymerase epsilon subunit B2 (DPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: epsilon DNA polymerase complex, nucleus; EXPRESSED IN: embryo, male gametophyte, apical meristem, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 412 Blast hits to 394 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 144; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR