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11-0192-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19319696 [Map]; Strand: c
      • AT2G47020.1 - [+] show detail - Peptide chain release factor 1
        Distance: 0; Region: exon11 (3UTR)
      • AT2G47015.1 - [+] show detail - MIR408; miRNA
        Distance: -84; Region: promoter
    Flanking Genome Sequence: 11-0192-1 - 3-prime edge 
    GCCAGATCGC AGTACAAGAC TTTGCAAAAC AAGGGAGTAC AAATATTTCT 
    GGTGAATT

AT2G47015.1

Model type
miRNA
Short Description
MIR408; miRNA
Curator Summary
Encodes a microRNA that targets both a Laccase and Plantacyanin-like family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AUGCACUGCCUCUUCCCUGGC
Link
InterPro Scan - TAIR

AT2G47020.1

Model type
Protein coding
Short Description
Peptide chain release factor 1
Computational Description
Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR