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11-0232-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1188981 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: -464; Region: promoter
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: -705; Region: promoter
    Flanking Genome Sequence: 11-0232-1 - 5-prime edge
    TGCAGATTCA TACCAAAACC AAATCACTAG ATTAAACTGA AATTCTAATG 
    TGGATTATTT TAATTTTACT TCTATTTTTC TTCACCCAAA TATTTTATAA
    CCAAACACCA AGTTGACACC AAAATATACA TCCAAAAAAC TTAGATTGCT
    TCTATTTTAC GACTATCCGA AATCGAATCA TAAACCGTAG GCAATGGTCC
    ATTAATAAGG GGTATACGAG GATTCAAAGT TTGAGAGAAC TTTTTTATCT
    TTACCTTTTT CCTTTTGTAA AGTAAAAGCA GTGGATTTTG ATTATAGATT
    CTACTTGGTA ATGACTAATG AGAATCAAGT TCTCACCTTT AAGCCATATA
    GACTTTAGAT ATTTAATGGA TTCTACAAAA GTGGGCATGA CCAGAATCGA
    GTTCATGAAC CACCGTCCTC GGCCCCAACG TTAAAAAACT TTTTTCTCTA
    GCATAAGAAG ATAAGAGTAT CTTCACTGCG CTTTAGGCCC ACTCAACATT
    CAAACAAAAT TCGATCTCTT ATAAAAAAAT ATCTCACAAG AGAAAGTTCG
    TACATGATCC CGATAAAATC GTAGATGAGC AAATCAAAGA TGAGATGTCG
    GTAAAAAAAA CGCTATTAGA AGAACACACG CCACTAGTTG NGGATAAAGT
    NGNCTACTTT NGTCTCGNNG GGATTATTAT ATTGCACAAT TATTAACATT
    CATACTCTCA TATGGGTATT GNTTTTGGTC TCCG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1189097 [Map]; Strand: c
      • AT1G04400.1 - [+] show detail - cryptochrome 2
        Distance: -580; Region: promoter
      • AT1G04400.2 - [+] show detail - cryptochrome 2
        Distance: -821; Region: promoter
      • AT1G04410.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 11-0232-1 - 3-prime edge
    AATCTGCAAG AGTAGCATTT CTTTTTGCAA TTGCAACACA ATAACACCAT 
    TCCTCACAAA TCACAATTGC ACAAACCCAT TATCGAAGAG CTCATCAATT
    TTGGGCTAAT TGCTAAAGCA GAAAAAAATA ATCGCAAAAG ATAACCATGC
    AACTGCCAAT TTTCTTCTTT TCATGGGTAA ACCAAATCAG ACACATTGAA
    AAAAACGATA TCCTGGTTTA GAAACAGACC AGGGACAATA CTCATCAAAG
    AGACCAAAGA GGTTATAAAA CAGTGTTTGG AGATC

AT1G04400.1

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04400.2

Model type
Protein coding
Short Description
cryptochrome 2
Curator Summary
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Computational Description
cryptochrome 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 1 (TAIR:AT4G08920.1); Has 10129 Blast hits to 10113 proteins in 1516 species: Archae - 99; Bacteria - 3201; Metazoa - 386; Fungi - 148; Plants - 723; Viruses - 2; Other Eukaryotes - 5570 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04410.1

Model type
Protein coding
Short Description
Lactate/malate dehydrogenase family protein
Computational Description
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink).
Link
InterPro Scan - TAIR