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11-0241-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 849924 [Map]; Strand: c
      • AT3G03540.1 - [+] show detail - non-specific phospholipase C5
        Distance: -1627; Region: intergenic
      • AT3G03550.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 184; Region: intergenic
    Flanking Genome Sequence: 11-0241-1 - 5-prime edge 
    ACTCTAATTA TACACTGAGA TCCTAAAATT GCAAGATACG AGAGAGGGAA 
    ATAAGTCAAG TATGAGATTA ATCTATGCAG CCTAAAACAA GTTTTTTTAT 
    TGCATGGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 850040 [Map]; Strand: c
      • AT3G03540.1 - [+] show detail - non-specific phospholipase C5
        Distance: -1743; Region: intergenic
      • AT3G03550.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 68; Region: intergenic
    Flanking Genome Sequence: 11-0241-1 - 3-prime edge 
    ATTAGAGTGC ATCTATTGGT CACCAAATCC CTTGCAAATA TCATCGTTTT 
    GTATATATAT TAAGCT

AT3G03540.1

Model type
Protein coding
Short Description
non-specific phospholipase C5
Curator Summary
Encodes a nonspecific phospholipase C. Located in the cytosol. Involved in the conversion of phospholipids to glycolipids under phosphate deprivation conditions.
Computational Description
non-specific phospholipase C5 (NPC5); CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C4 (TAIR:AT3G03530.1); Has 2077 Blast hits to 2037 proteins in 379 species: Archae - 32; Bacteria - 1720; Metazoa - 0; Fungi - 127; Plants - 154; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03550.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G17600.1); Has 9886 Blast hits to 9859 proteins in 306 species: Archae - 0; Bacteria - 2; Metazoa - 2318; Fungi - 804; Plants - 5150; Viruses - 98; Other Eukaryotes - 1514 (source: NCBI BLink).
Link
InterPro Scan - TAIR