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11-0267-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30044640 [Map]; Strand: w
      • AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
        Distance: -465; Region: promoter
      • AT1G79870.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: -106; Region: promoter
      • AT1G79870.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: -106; Region: promoter
    Flanking Genome Sequence: 11-0267-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGGG TCATTTAGTG GCCCATAAAA AGCGGATAAT
    ATCAATTATG GGCCCAAAAA TAGGCCCATC TTTATCGTCA ACCTCCGATA
    AATTATACAC AGACCTCTCA CTGACTCAAT CATTTGCAGA AGAAAAATAA
    AAATAAAAAA CAGAGAAAAG GAGATATGGA ATCAATCGGA GTCCTTATGA
    TGTGCCCCAT GTCCTCCTAC CTCGAGAACG AGCTTGAGAA GCGCTTCAAC
    CTTCTTCGCT TCTGGACTTC TCCGGAGAAA TCCGTCCTCC TAGAAACTCA
    TCGGAACTCC ATCCGCGCCG TCGTTGGGAA TGCTTCTGCC GGCGCCGATG
    CTCAGCTCAT CAGCGATCTG CCCAACCTTG AGATTGTATC CAGCTTCAGC
    GTCGGGCTCG ACAAGATCGA TTTGGGGAAA TGCAAAGAAA AAGGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30044583 [Map]; Strand: w
      • AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
        Distance: -408; Region: promoter
      • AT1G79870.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: -163; Region: promoter
      • AT1G79870.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: -163; Region: promoter
    Flanking Genome Sequence: 11-0267-1 - 3-prime edge
    TTTTCAAGTT TTCCTCTTGG TTCCGAAATC ATGACTTATG TTTAAAGACA 
    ACATTGCACG TTTGATGATA TTCATGCAAA TTGTTGTAGG ATTCATGAAC
    ATGATACAAA CACAAGAAGA CATACACTGT ATGTGTATGG AAACGTAGCA
    GATTCCCCGT TGACATTGCA TGTTTAGGGA ATCCAGTGAC AAGGGTGTAA
    TCACATTTTA GTATGTTACT ATATGATAAC ATTTTATAAT TTTAACGGCT
    CTCTATCTCT AATTATCGAT GTTCAAAATC CTAAATAATG ATTAGTTAAA
    ATTAAGAGCT GTGGTCTGAA ACATGCGCCC CACGTCCCAT CTTCCAAAAA
    AAGGAAGCAA AAGAAGAAAG CTCCACAATT TTCTCAAAGC CAAAATCACT
    GTAACAATTA CCCTTTATTG TTTTGCGGCT CGATTAGCTT CTCCTTCCCT
    TTTGATTCTC CCCATCTCAA GAGAGGCCCA TTTGATCCTC TCTCTTTCTC
    TCTCTCTCCT CTCTAATTCT CTATTGCCAT CAAGAGACCA GGAATGGTTC
    GTGCTTCGGA ACAAGAACAG GAAACCTATA GGAGCAGGCT CTTCAATTTC
    AAATGGAGGA ACAACGACAA CAATAGTGCT ACGAGACACA ACAAGAGTCT
    CAGCGTCGAG ACCGGTTTAN ATGANGCTGC CACCGGATC

AT1G79860.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 12
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.
Computational Description
RHO guanyl-nucleotide exchange factor 12 (ROPGEF12); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 305 Blast hits to 303 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79870.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79870.2

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1).
Link
InterPro Scan - TAIR